2017

  • N. Karathanasopoulos, P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “Bayesian identification of the tendon fascicle’s structural composition using finite element models for helical geometries," Computer methods in applied mechanics and engineering, vol. 313, pp. 744-758, 2017.
    [BibTeX] [PDF] [DOI]
    @article{karathanasopoulos2017a,
    author = {N. Karathanasopoulos and P. Angelikopoulos and C. Papadimitriou and P. Koumoutsakos},
    doi = {10.1016/j.cma.2016.10.024},
    journal = {Computer Methods in Applied Mechanics and Engineering},
    month = {jan},
    pages = {744--758},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{B}ayesian identification of the tendon fascicle's structural composition using finite element models for helical geometries},
    url = {https://doi.org/10.1016%2Fj.cma.2016.10.024},
    volume = {313},
    year = {2017}
    }

  • P. Koumoutsakos, E. Chatzi, V. V. Krzhizhanovskaya, M. Lees, J. Dongarra, and P. M. A. Sloot, “The art of computational science, bridging gaps — forming alloys. preface for ICCS 2017," Procedia computer science, vol. 108, pp. 1-6, 2017.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2017a,
    author = {Petros Koumoutsakos and Eleni Chatzi and Valeria V. Krzhizhanovskaya and Michael Lees and Jack Dongarra and Peter M.A. Sloot},
    doi = {10.1016/j.procs.2017.05.281},
    journal = {Procedia Computer Science},
    pages = {1--6},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {The Art of Computational Science, Bridging Gaps {\textendash} Forming Alloys. Preface for {ICCS} 2017},
    url = {https://doi.org/10.1016%2Fj.procs.2017.05.281},
    volume = {108},
    year = {2017}
    }

  • L. Kulakova, G. Arampatzis, P. Angelikopoulos, P. Hadjidoukas, C. Papadimitriou, and P. Koumoutsakos, “Data driven inference for the repulsive exponent of the Lennard-Jones potential in molecular dynamics simulations," Scientific reports, vol. 7, iss. 1, p. 16576, 2017.
    [BibTeX] [Abstract] [PDF] [DOI]

    The Lennard-Jones (LJ) potential is a cornerstone of Molecular Dynamics (MD) simulations and among the most widely used computational kernels in science. The LJ potential models atomistic attraction and repulsion with century old prescribed parameters (q=6, p=12 respectively), originally related by a factor of two for simplicity of calculations. We propose the inference of the repulsion exponent through Hierarchical Bayesian uncertainty quantification We use experimental data of the radial distribution function and dimer interaction energies from quantum mechanics simulations. We find that the repulsion exponent p\approx6.5 provides an excellent fit for the experimental data of liquid argon, for a range of thermodynamic conditions, as well as for saturated argon vapour. Calibration using the quantum simulation data did not provide a good fit in these cases. However, values p\approx12.7 obtained by dimer quantum simulations are preferred for the argon gas while lower values are promoted by experimental data. These results show that the proposed LJ 6-p potential applies to a wider range of thermodynamic conditions, than the classical LJ 6-12 potential. We suggest that calibration of the repulsive exponent in the LJ potential widens the range of applicability and accuracy of MD simulations.

    @article{kulakova2017a,
    abstract = {The Lennard-Jones (LJ) potential is a cornerstone of Molecular Dynamics (MD) simulations and among the most widely used computational kernels in science. The LJ potential models atomistic attraction and repulsion with century old prescribed parameters (q=6, p=12 respectively), originally related by a factor of two for simplicity of calculations. We propose the inference of the repulsion exponent through Hierarchical Bayesian uncertainty quantification We use experimental data of the radial distribution function and dimer interaction energies from quantum mechanics simulations. We find that the repulsion exponent p\approx6.5 provides an excellent fit for the experimental data of liquid argon, for a range of thermodynamic conditions, as well as for saturated argon vapour. Calibration using the quantum simulation data did not provide a good fit in these cases. However, values p\approx12.7 obtained by dimer quantum simulations are preferred for the argon gas while lower values are promoted by experimental data. These results show that the proposed LJ 6-p potential applies to a wider range of thermodynamic conditions, than the classical LJ 6-12 potential. We suggest that calibration of the repulsive exponent in the LJ potential widens the range of applicability and accuracy of MD simulations.},
    author = {Kulakova, Lina and Arampatzis, Georgios and Angelikopoulos, Panagiotis and Hadjidoukas, Panagiotis and Papadimitriou, Costas and Koumoutsakos, Petros},
    doi = {10.1038/s41598-017-16314-4},
    issn = {2045-2322},
    journal = {Scientific Reports},
    number = {1},
    pages = {16576},
    section = {Journals},
    title = {Data driven inference for the repulsive exponent of the {L}ennard-{J}ones potential in molecular dynamics simulations},
    url = {https://doi.org/10.1038/s41598-017-16314-4},
    volume = {7},
    year = {2017}
    }

  • B. Mosimann, G. Arampatzis, S. Amylidi-Mohr, A. Bessire, M. Spinelli, P. Koumoutsakos, D. Surbek, and L. Raio, “Reference ranges for fetal atrioventricular and ventriculoatrial time intervals and their ratios during normal pregnancy," Fetal diagnosis and therapy, 2017.
    [BibTeX] [PDF] [DOI]
    @article{mosimann2017a,
    author = {Beatrice Mosimann and Georgios Arampatzis and Sofia Amylidi-Mohr and Anice Bessire and Marialuigia Spinelli and Petros Koumoutsakos and Daniel Surbek and Luigi Raio},
    doi = {10.1159/000481349},
    journal = {Fetal Diagnosis and Therapy},
    month = {oct},
    publisher = {S. Karger {AG}},
    section = {Journals},
    title = {Reference Ranges for Fetal Atrioventricular and Ventriculoatrial Time Intervals and Their Ratios during Normal Pregnancy},
    url = {https://doi.org/10.1159%2F000481349},
    year = {2017}
    }

  • G. Novati, S. Verma, D. Alexeev, D. Rossinelli, W. M. van Rees, and P. Koumoutsakos, “Synchronisation through learning for two self-propelled swimmers," Bioinspiration & biomimetics, vol. 12, iss. 3, p. 36001, 2017.
    [BibTeX] [PDF] [DOI]
    @article{novati2017a,
    author = {Guido Novati and Siddhartha Verma and Dmitry Alexeev and Diego Rossinelli and Wim M van Rees and Petros Koumoutsakos},
    doi = {10.1088/1748-3190/aa6311},
    journal = {Bioinspiration {\&} Biomimetics},
    month = {mar},
    number = {3},
    pages = {036001},
    publisher = {{IOP} Publishing},
    section = {Journals},
    title = {Synchronisation through learning for two self-propelled swimmers},
    url = {https://doi.org/10.1088%2F1748-3190%2Faa6311},
    volume = {12},
    year = {2017}
    }

  • S. Verma, G. Abbati, G. Novati, and P. Koumoutsakos, “Computing the force distribution on the surface of complex, deforming geometries using vortex methods and Brinkman penalization," International journal for numerical methods in fluids, 2017.
    [BibTeX] [PDF] [DOI]
    @article{verma2017a,
    author = {Siddhartha Verma and Gabriele Abbati and Guido Novati and Petros Koumoutsakos},
    doi = {10.1002/fld.4392},
    journal = {International Journal for Numerical Methods in Fluids},
    month = {jun},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Computing the force distribution on the surface of complex, deforming geometries using vortex methods and {B}rinkman penalization},
    url = {https://doi.org/10.1002%2Ffld.4392},
    year = {2017}
    }

  • S. Wu, P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “Bayesian annealed sequential importance sampling (BASIS): an unbiased version of transitional markov chain Monte Carlo," ASCE-ASME j. risk and uncert. in engrg. sys., part b: mech. engrg., 2017.
    [BibTeX] [PDF] [DOI]
    @article{wu2017a,
    author = {Stephen Wu and Panagiotis Angelikopoulos and Costas Papadimitriou and Petros Koumoutsakos},
    doi = {10.1115/1.4037450},
    journal = {{ASCE}-{ASME} J. Risk and Uncert. in Engrg. Sys., Part B: Mech. Engrg.},
    month = {aug},
    publisher = {{ASME} International},
    section = {Journals},
    title = {{B}ayesian Annealed Sequential Importance Sampling ({BASIS}): an unbiased version of Transitional Markov Chain {M}onte {C}arlo},
    url = {https://doi.org/10.1115%2F1.4037450},
    year = {2017}
    }

2016

  • J. Chen, J. H. Walther, and P. Koumoutsakos, “Ultrafast cooling by covalently bonded graphene-carbon nanotube hybrid immersed in water," Nanotechnology, vol. 27, iss. 46, p. 465705, 2016.
    [BibTeX] [PDF] [DOI]
    @article{chen2016a,
    author = {Jie Chen and Jens H Walther and Petros Koumoutsakos},
    doi = {10.1088/0957-4484/27/46/465705},
    journal = {Nanotechnology},
    month = {oct},
    number = {46},
    pages = {465705},
    publisher = {{IOP} Publishing},
    section = {Journals},
    title = {Ultrafast cooling by covalently bonded graphene-carbon nanotube hybrid immersed in water},
    url = {https://doi.org/10.1088%2F0957-4484%2F27%2F46%2F465705},
    volume = {27},
    year = {2016}
    }

  • M. Gazzola, A. A. Tchieu, D. Alexeev, A. de Brauer, and P. Koumoutsakos, “Learning to school in the presence of hydrodynamic interactions," Journal of fluid mechanics, vol. 789, pp. 726-749, 2016.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2016a,
    author = {M. Gazzola and A. A. Tchieu and D. Alexeev and A. de Brauer and P. Koumoutsakos},
    doi = {10.1017/jfm.2015.686},
    journal = {Journal of Fluid Mechanics},
    month = {jan},
    pages = {726--749},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Learning to school in the presence of hydrodynamic interactions},
    url = {https://doi.org/10.1017%2Fjfm.2015.686},
    volume = {789},
    year = {2016}
    }

  • S. Wu, P. Angelikopoulos, G. Tauriello, C. Papadimitriou, and P. Koumoutsakos, “Fusing heterogeneous data for the calibration of molecular dynamics force fields using hierarchical Bayesian models," The journal of chemical physics, vol. 145, iss. 24, p. 244112, 2016.
    [BibTeX] [PDF] [DOI]
    @article{wu2016a,
    author = {Stephen Wu and Panagiotis Angelikopoulos and Gerardo Tauriello and Costas Papadimitriou and Petros Koumoutsakos},
    doi = {10.1063/1.4967956},
    journal = {The Journal of Chemical Physics},
    month = {dec},
    number = {24},
    pages = {244112},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Fusing heterogeneous data for the calibration of molecular dynamics force fields using hierarchical {B}ayesian models},
    url = {https://doi.org/10.1063%2F1.4967956},
    volume = {145},
    year = {2016}
    }

2015

  • D. Alexeev, J. Chen, J. H. Walther, K. P. Giapis, P. Angelikopoulos, and P. Koumoutsakos, “Kapitza resistance between few-layer graphene and water: liquid layering effects," Nano letters, vol. 15, iss. 9, pp. 5744-5749, 2015.
    [BibTeX] [PDF] [DOI]
    @article{alexeev2015a,
    author = {Dmitry Alexeev and Jie Chen and Jens H. Walther and Konstantinos P. Giapis and Panagiotis Angelikopoulos and Petros Koumoutsakos},
    doi = {10.1021/acs.nanolett.5b03024},
    journal = {Nano Letters},
    month = {sep},
    number = {9},
    pages = {5744--5749},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Kapitza Resistance between Few-Layer Graphene and Water: Liquid Layering Effects},
    url = {https://doi.org/10.1021%2Facs.nanolett.5b03024},
    volume = {15},
    year = {2015}
    }

  • P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “X-TMCMC: adaptive kriging for Bayesian inverse modeling," Computer methods in applied mechanics and engineering, vol. 289, pp. 409-428, 2015.
    [BibTeX] [PDF] [DOI]
    @article{angelikopoulos2015a,
    author = {Panagiotis Angelikopoulos and Costas Papadimitriou and Petros Koumoutsakos},
    doi = {10.1016/j.cma.2015.01.015},
    journal = {Computer Methods in Applied Mechanics and Engineering},
    month = {jun},
    pages = {409--428},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{X-TMCMC}: Adaptive kriging for {B}ayesian inverse modeling},
    url = {https://doi.org/10.1016%2Fj.cma.2015.01.015},
    volume = {289},
    year = {2015}
    }

  • M. U. Baumann, M. Marti, L. Durrer, P. Koumoutsakos, P. Angelikopoulos, D. Bolla, G. Acharya, U. Bichsel, D. V. Surbek, and L. Raio, “Placental plasticity in monochorionic twins: impact on birth weight and placental weight," Placenta, vol. 36, iss. 9, pp. 1018-1023, 2015.
    [BibTeX] [PDF] [DOI]
    @article{baumann2015a,
    author = {Marc U. Baumann and Michelle Marti and Lukas Durrer and Petros Koumoutsakos and Panagiotis Angelikopoulos and Daniele Bolla and Ganesh Acharya and Ursina Bichsel and Daniel V. Surbek and Luigi Raio},
    doi = {10.1016/j.placenta.2015.07.120},
    journal = {Placenta},
    month = {sep},
    number = {9},
    pages = {1018--1023},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Placental plasticity in monochorionic twins: Impact on birth weight and placental weight},
    url = {https://doi.org/10.1016%2Fj.placenta.2015.07.120},
    volume = {36},
    year = {2015}
    }

  • J. Chen, J. H. Walther, and P. Koumoutsakos, “Covalently bonded graphene-carbon nanotube hybrid for high-performance thermal interfaces," Advanced functional materials, vol. 25, iss. 48, pp. 7539-7545, 2015.
    [BibTeX] [PDF] [DOI]
    @article{chen2015a,
    author = {Jie Chen and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1002/adfm.201501593},
    journal = {Advanced Functional Materials},
    month = {nov},
    number = {48},
    pages = {7539--7545},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Covalently Bonded Graphene-Carbon Nanotube Hybrid for High-Performance Thermal Interfaces},
    url = {https://doi.org/10.1002%2Fadfm.201501593},
    volume = {25},
    year = {2015}
    }

  • C. Conti, D. Rossinelli, D. Alexeev, K. Lykov, P. Hadjidoukas, and P. Koumoutsakos, “Video: the in-silico lab-on-a-chip – catching a needle in a flowing haystack," in 68th annual meeting of the APS division of fluid dynamics – gallery of fluid motion, 2015.
    [BibTeX] [DOI]
    @inproceedings{conti2015a,
    author = {Christian Conti and Diego Rossinelli and Dmitry Alexeev and Kirill Lykov and Panagiotis Hadjidoukas and Petros Koumoutsakos},
    booktitle = {68th Annual Meeting of the {APS} Division of Fluid Dynamics - Gallery of Fluid Motion},
    doi = {10.1103/aps.dfd.2015.gfm.v0008},
    month = {nov},
    publisher = {American Physical Society},
    section = {Journals},
    title = {Video: The In-Silico Lab-on-a-Chip - Catching a Needle in a Flowing Haystack},
    url = {https://doi.org/10.1103%2Faps.dfd.2015.gfm.v0008},
    year = {2015}
    }

  • S. Finley, P. Angelikopoulos, P. Koumoutsakos, and A. Popel, “Pharmacokinetics of anti-VEGF agent aflibercept in cancer predicted by data-driven, molecular-detailed model," CPT: pharmacometrics & systems pharmacology, vol. 4, iss. 11, pp. 641-649, 2015.
    [BibTeX] [PDF] [DOI]
    @article{finley2015a,
    author = {SD Finley and P Angelikopoulos and P Koumoutsakos and AS Popel},
    doi = {10.1002/psp4.12040},
    journal = {{CPT}: Pharmacometrics {\&} Systems Pharmacology},
    month = {oct},
    number = {11},
    pages = {641--649},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Pharmacokinetics of Anti-{VEGF} Agent Aflibercept in Cancer Predicted by Data-Driven, Molecular-Detailed Model},
    url = {https://doi.org/10.1002%2Fpsp4.12040},
    volume = {4},
    year = {2015}
    }

  • P. E. Hadjidoukas, P. Angelikopoulos, L. Kulakova, C. Papadimitriou, and P. Koumoutsakos, “Exploiting task-based parallelism in Bayesian uncertainty quantification," in Lecture notes in computer science, Springer Berlin Heidelberg, 2015, pp. 532-544.
    [BibTeX] [PDF] [DOI]
    @incollection{hadjidoukas2015a,
    author = {Panagiotis E. Hadjidoukas and Panagiotis Angelikopoulos and Lina Kulakova and Costas Papadimitriou and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-662-48096-0_41},
    pages = {532--544},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Exploiting Task-Based Parallelism in {B}ayesian Uncertainty Quantification},
    url = {https://doi.org/10.1007%2F978-3-662-48096-0_41},
    year = {2015}
    }

  • P. E. Hadjidoukas, P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “Π4U: a high performance computing framework for Bayesian uncertainty quantification of complex models," Journal of computational physics, vol. 284, pp. 1-21, 2015.
    [BibTeX] [PDF] [DOI]
    @article{hadjidoukas2015b,
    author = {Hadjidoukas, Panagiotis E and Angelikopoulos, Panagiotis and Papadimitriou, Costas and Koumoutsakos, Petros},
    doi = {https://doi.org/10.1016/j.jcp.2014.12.006},
    journal = {Journal of Computational Physics},
    pages = {1--21},
    publisher = {Elsevier},
    section = {Journals},
    title = {\Pi{4U}: A high performance computing framework for {B}ayesian uncertainty quantification of complex models},
    volume = {284},
    year = {2015}
    }

  • M. M. Hejlesen, P. Koumoutsakos, A. Leonard, and J. H. Walther, “Iterative Brinkman penalization for remeshed vortex methods," Journal of computational physics, vol. 280, pp. 547-562, 2015.
    [BibTeX] [PDF] [DOI]
    @article{hejlesen2015c,
    author = {Hejlesen, Mads M{\o}lholm and Koumoutsakos, Petros and Leonard, Anthony and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jcp.2014.09.029},
    journal = {Journal of Computational Physics},
    month = {jan},
    pages = {547--562},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Iterative {B}rinkman penalization for remeshed vortex methods},
    url = {https://doi.org/10.1016%2Fj.jcp.2014.09.029},
    volume = {280},
    year = {2015}
    }

  • F. Huhn, W. M. van Rees, M. Gazzola, D. Rossinelli, G. Haller, and P. Koumoutsakos, “Quantitative flow analysis of swimming dynamics with coherent lagrangian vortices," Chaos: an interdisciplinary journal of nonlinear science, vol. 25, iss. 8, p. 87405, 2015.
    [BibTeX] [PDF] [DOI]
    @article{huhn2015a,
    author = {F. Huhn and W. M. van Rees and M. Gazzola and D. Rossinelli and G. Haller and P. Koumoutsakos},
    doi = {10.1063/1.4919784},
    journal = {Chaos: An Interdisciplinary Journal of Nonlinear Science},
    month = {aug},
    number = {8},
    pages = {087405},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Quantitative flow analysis of swimming dynamics with coherent Lagrangian vortices},
    url = {https://doi.org/10.1063%2F1.4919784},
    volume = {25},
    year = {2015}
    }

  • P. R. Jones, X. Hao, E. R. Cruz-Chu, K. Rykaczewski, K. Nandy, T. M. Schutzius, K. K. Varanasi, C. M. Megaridis, J. H. Walther, P. Koumoutsakos, H. D. Espinosa, and N. A. Patankar, “Sustaining dry surfaces under water," Scientific reports, vol. 5, iss. 1, 2015.
    [BibTeX] [PDF] [DOI]
    @article{jones2015a,
    author = {Paul R. Jones and Xiuqing Hao and Eduardo R. Cruz-Chu and Konrad Rykaczewski and Krishanu Nandy and Thomas M. Schutzius and Kripa K. Varanasi and Constantine M. Megaridis and Jens H. Walther and Petros Koumoutsakos and Horacio D. Espinosa and Neelesh A. Patankar},
    doi = {10.1038/srep12311},
    journal = {Scientific Reports},
    month = {aug},
    number = {1},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Sustaining dry surfaces under water},
    url = {https://doi.org/10.1038%2Fsrep12311},
    volume = {5},
    year = {2015}
    }

  • A. Popadić, M. Praprotnik, P. Koumoutsakos, and J. H. Walther, “Continuum simulations of water flow past fullerene molecules," The european physical journal special topics, vol. 224, iss. 12, pp. 2321-2330, 2015.
    [BibTeX] [PDF] [DOI]
    @article{popadic2015a,
    author = {A. Popadi{\'{c}} and M. Praprotnik and P. Koumoutsakos and J. H. Walther},
    doi = {10.1140/epjst/e2015-02414-y},
    journal = {The European Physical Journal Special Topics},
    month = {jun},
    number = {12},
    pages = {2321--2330},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Continuum simulations of water flow past fullerene molecules},
    url = {https://doi.org/10.1140%2Fepjst%2Fe2015-02414-y},
    volume = {224},
    year = {2015}
    }

  • W. M. van Rees, G. Novati, and P. Koumoutsakos, “Self-propulsion of a counter-rotating cylinder pair in a viscous fluid," Physics of fluids, vol. 27, iss. 6, p. 63102, 2015.
    [BibTeX] [PDF] [DOI]
    @article{rees2015a,
    author = {Wim M. van Rees and Guido Novati and Petros Koumoutsakos},
    doi = {10.1063/1.4922314},
    journal = {Physics of Fluids},
    month = {jun},
    number = {6},
    pages = {063102},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Self-propulsion of a counter-rotating cylinder pair in a viscous fluid},
    url = {https://doi.org/10.1063%2F1.4922314},
    volume = {27},
    year = {2015}
    }

  • W. M. van Rees, M. Gazzola, and P. Koumoutsakos, “Optimal morphokinematics for undulatory swimmers at intermediate Reynolds numbers," Journal of fluid mechanics, vol. 775, pp. 178-188, 2015.
    [BibTeX] [PDF] [DOI]
    @article{rees2015b,
    author = {Wim M. van Rees and Mattia Gazzola and Petros Koumoutsakos},
    doi = {10.1017/jfm.2015.283},
    journal = {Journal of Fluid Mechanics},
    month = {jun},
    pages = {178--188},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Optimal morphokinematics for undulatory swimmers at intermediate {R}eynolds numbers},
    url = {https://doi.org/10.1017%2Fjfm.2015.283},
    volume = {775},
    year = {2015}
    }

  • P. B. de Reuille, A. Routier-Kierzkowska, D. Kierzkowski, G. W. Bassel, T. Schüpbach, G. Tauriello, N. Bajpai, S. Strauss, A. Weber, A. Kiss, A. Burian, H. Hofhuis, A. Sapala, M. Lipowczan, M. B. Heimlicher, S. Robinson, E. M. Bayer, K. Basler, P. Koumoutsakos, A. H. Roeder, T. Aegerter-Wilmsen, N. Nakayama, M. Tsiantis, A. Hay, D. Kwiatkowska, I. Xenarios, C. Kuhlemeier, and R. S. Smith, “MorphoGraphX: a platform for quantifying morphogenesis in 4D," Elife, vol. 4, 2015.
    [BibTeX] [PDF] [DOI]
    @article{reuille2015a,
    author = {Pierre Barbier de Reuille and Anne-Lise Routier-Kierzkowska and Daniel Kierzkowski and George W Bassel and Thierry Sch{\"u}pbach and Gerardo Tauriello and Namrata Bajpai and S{\"o}ren Strauss and Alain Weber and Annamaria Kiss and Agata Burian and Hugo Hofhuis and Aleksandra Sapala and Marcin Lipowczan and Maria B Heimlicher and Sarah Robinson and Emmanuelle M Bayer and Konrad Basler and Petros Koumoutsakos and Adrienne HK Roeder and Tinri Aegerter-Wilmsen and Naomi Nakayama and Miltos Tsiantis and Angela Hay and Dorota Kwiatkowska and Ioannis Xenarios and Cris Kuhlemeier and Richard S Smith},
    doi = {10.7554/elife.05864},
    journal = {eLife},
    month = {may},
    publisher = {{eLife} Sciences Organisation, Ltd.},
    section = {Journals},
    title = {{MorphoGraphX}: A platform for quantifying morphogenesis in {4D}},
    url = {https://doi.org/10.7554elife.05864},
    volume = {4},
    year = {2015}
    }

  • D. Rossinelli, B. Hejazialhosseini, W. van Rees, M. Gazzola, M. Bergdorf, and P. Koumoutsakos, “MRAG-i2d: multi-resolution adapted grids for remeshed vortex methods on multicore architectures," Journal of computational physics, vol. 288, pp. 1-18, 2015.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2015a,
    author = {Diego Rossinelli and Babak Hejazialhosseini and Wim van Rees and Mattia Gazzola and Michael Bergdorf and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2015.01.035},
    journal = {Journal of Computational Physics},
    month = {may},
    pages = {1--18},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{MRAG}-I2D: Multi-resolution adapted grids for remeshed vortex methods on multicore architectures},
    url = {https://doi.org/10.1016%2Fj.jcp.2015.01.035},
    volume = {288},
    year = {2015}
    }

  • G. Tauriello and P. Koumoutsakos, “A comparative study of penalization and phase field methods for the solution of the diffusion equation in complex geometries," Journal of computational physics, vol. 283, pp. 388-407, 2015.
    [BibTeX] [PDF] [DOI]
    @article{tauriello2015a,
    author = {Gerardo Tauriello and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2014.11.033},
    journal = {Journal of Computational Physics},
    month = {feb},
    pages = {388--407},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A comparative study of penalization and phase field methods for the solution of the diffusion equation in complex geometries},
    url = {https://doi.org/10.1016%2Fj.jcp.2014.11.033},
    volume = {283},
    year = {2015}
    }

  • G. Tauriello, H. M. Meyer, R. S. Smith, P. Koumoutsakos, and A. H. K. Roeder, “Variability and constancy in cellular growth of arabidopsis sepals," Plant physiology, p. pp.00839.2015, 2015.
    [BibTeX] [PDF] [DOI]
    @article{tauriello2015b,
    author = {Gerardo Tauriello and Heather M. Meyer and Richard S Smith and Petros Koumoutsakos and Adrienne H. K. Roeder},
    doi = {10.1104/pp.15.00839},
    journal = {Plant Physiology},
    month = {oct},
    pages = {pp.00839.2015},
    publisher = {American Society of Plant Biologists ({ASPB})},
    section = {Journals},
    title = {Variability and constancy in cellular growth of Arabidopsis sepals},
    url = {https://doi.org/10.1104%2Fpp.15.00839},
    year = {2015}
    }

  • S. Wu, P. Angelikopoulos, C. Papadimitriou, R. Moser, and P. Koumoutsakos, “A hierarchical Bayesian framework for force field selection in molecular dynamics simulations," Philosophical transactions of the royal society a: mathematical, physical and engineering sciences, vol. 374, iss. 2060, p. 20150032, 2015.
    [BibTeX] [PDF] [DOI]
    @article{wu2015a,
    author = {S. Wu and P. Angelikopoulos and C. Papadimitriou and R. Moser and P. Koumoutsakos},
    doi = {10.1098/rsta.2015.0032},
    journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
    month = {dec},
    number = {2060},
    pages = {20150032},
    publisher = {The Royal Society},
    section = {Journals},
    title = {A hierarchical {B}ayesian framework for force field selection in molecular dynamics simulations},
    url = {https://doi.org/10.1098%2Frsta.2015.0032},
    volume = {374},
    year = {2015}
    }

2014

  • J. Chen, J. H. Walther, and P. Koumoutsakos, “Strain engineering of kapitza resistance in few-layer graphene," Nano letters, vol. 14, iss. 2, pp. 819-825, 2014.
    [BibTeX] [PDF] [DOI]
    @article{chen2014a,
    author = {Jie Chen and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1021/nl404182k},
    journal = {Nano Letters},
    month = {feb},
    number = {2},
    pages = {819--825},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Strain Engineering of Kapitza Resistance in Few-Layer Graphene},
    url = {https://doi.org/10.1021%2Fnl404182k},
    volume = {14},
    year = {2014}
    }

  • E. R. Cruz-Chu, A. Malafeev, T. Pajarskas, I. V. Pivkin, and P. Koumoutsakos, “Structure and response to flow of the glycocalyx layer," Biophysical journal, vol. 106, iss. 1, pp. 232-243, 2014.
    [BibTeX] [PDF] [DOI]
    @article{cruzchu2014a,
    author = {Eduardo R. Cruz-Chu and Alexander Malafeev and Tautrimas Pajarskas and Igor V. Pivkin and Petros Koumoutsakos},
    doi = {10.1016/j.bpj.2013.09.060},
    journal = {Biophysical Journal},
    month = {jan},
    number = {1},
    pages = {232--243},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Structure and Response to Flow of the Glycocalyx Layer},
    url = {https://doi.org/10.1016%2Fj.bpj.2013.09.060},
    volume = {106},
    year = {2014}
    }

  • M. Gazzola, B. Hejazialhosseini, and P. Koumoutsakos, “Reinforcement learning and wavelet adapted vortex methods for simulations of self-propelled swimmers," SIAM journal on scientific computing, vol. 36, iss. 3, p. B622–B639, 2014.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2014a,
    author = {Mattia Gazzola and Babak Hejazialhosseini and Petros Koumoutsakos},
    doi = {10.1137/130943078},
    journal = {{SIAM} Journal on Scientific Computing},
    month = {jan},
    number = {3},
    pages = {B622--B639},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {Reinforcement Learning and Wavelet Adapted Vortex Methods for Simulations of Self-propelled Swimmers},
    url = {https://doi.org/10.1137%2F130943078},
    volume = {36},
    year = {2014}
    }

  • P. E. Hadjidoukas, P. Angelikopoulos, D. Rossinelli, D. Alexeev, C. Papadimitriou, and P. Koumoutsakos, “Bayesian uncertainty quantification and propagation for discrete element simulations of granular materials," Computer methods in applied mechanics and engineering, vol. 282, pp. 218-238, 2014.
    [BibTeX] [PDF] [DOI]
    @article{hadjidoukas2014c,
    author = {P.E. Hadjidoukas and P. Angelikopoulos and D. Rossinelli and D. Alexeev and C. Papadimitriou and P. Koumoutsakos},
    doi = {10.1016/j.cma.2014.07.017},
    journal = {Computer Methods in Applied Mechanics and Engineering},
    month = {dec},
    pages = {218--238},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{B}ayesian uncertainty quantification and propagation for discrete element simulations of granular materials},
    url = {https://doi.org/10.1016%2Fj.cma.2014.07.017},
    volume = {282},
    year = {2014}
    }

  • F. Milde, G. Tauriello, H. Haberkern, and P. Koumoutsakos, “SEM++: a particle model of cellular growth, signaling and migration," Computational particle mechanics, vol. 1, iss. 2, pp. 211-227, 2014.
    [BibTeX] [PDF] [DOI]
    @article{milde2014a,
    author = {Florian Milde and Gerardo Tauriello and Hannah Haberkern and Petros Koumoutsakos},
    doi = {10.1007/s40571-014-0017-4},
    journal = {Computational Particle Mechanics},
    month = {may},
    number = {2},
    pages = {211--227},
    publisher = {Springer Nature},
    section = {Journals},
    title = {{SEM}++: A particle model of cellular growth, signaling and migration},
    url = {https://doi.org/10.1007%2Fs40571-014-0017-4},
    volume = {1},
    year = {2014}
    }

  • A. Popadić, J. H. Walther, P. Koumoutsakos, and M. Praprotnik, “Continuum simulations of water flow in carbon nanotube membranes," New journal of physics, vol. 16, iss. 8, p. 82001, 2014.
    [BibTeX] [PDF] [DOI]
    @article{popadic2014a,
    author = {A Popadi{\'{c}} and J H Walther and P Koumoutsakos and M Praprotnik},
    doi = {10.1088/1367-2630/16/8/082001},
    journal = {New Journal of Physics},
    month = {aug},
    number = {8},
    pages = {082001},
    publisher = {{IOP} Publishing},
    section = {Journals},
    title = {Continuum simulations of water flow in carbon nanotube membranes},
    url = {https://doi.org/10.1088%2F1367-2630%2F16%2F8%2F082001},
    volume = {16},
    year = {2014}
    }

  • W. M. van Rees, D. Rossinelli, P. Hadjidoukas, and P. Koumoutsakos, “High performance CPU/GPU multiresolution poisson solver," Parallel computing: accelerating computational science and engineering (CSE), vol. 1, iss. 1, pp. 481-490, 2014.
    [BibTeX] [PDF]
    @article{vanrees2014a,
    author = {van Rees, Wim M and Rossinelli, Diego and Hadjidoukas, Panagiotis and Koumoutsakos, Petros},
    journal = {Parallel Computing: Accelerating Computational Science and Engineering {(CSE)}},
    number = {1},
    pages = {481--490},
    section = {Journals},
    title = {High performance {CPU/GPU} multiresolution Poisson solver},
    volume = {1},
    year = {2014}
    }

2013

  • P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “Data driven, predictive molecular dynamics for nanoscale flow simulations under uncertainty," The journal of physical chemistry b, vol. 117, iss. 47, pp. 14808-14816, 2013.
    [BibTeX] [PDF] [DOI]
    @article{angelikopoulos2013a,
    author = {Panagiotis Angelikopoulos and Costas Papadimitriou and Petros Koumoutsakos},
    doi = {10.1021/jp4084713},
    journal = {The Journal of Physical Chemistry B},
    month = {nov},
    number = {47},
    pages = {14808--14816},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Data Driven, Predictive Molecular Dynamics for Nanoscale Flow Simulations under Uncertainty},
    url = {https://doi.org/10.1021%2Fjp4084713},
    volume = {117},
    year = {2013}
    }

  • D. Franco, F. Milde, M. Klingauf, F. Orsenigo, E. Dejana, D. Poulikakos, M. Cecchini, P. Koumoutsakos, A. Ferrari, and V. Kurtcuoglu, “Accelerated endothelial wound healing on microstructured substrates under flow," Biomaterials, vol. 34, iss. 5, pp. 1488-1497, 2013.
    [BibTeX] [PDF] [DOI]
    @article{franco2013a,
    author = {Davide Franco and Florian Milde and Mirko Klingauf and Fabrizio Orsenigo and Elisabetta Dejana and Dimos Poulikakos and Marco Cecchini and Petros Koumoutsakos and Aldo Ferrari and Vartan Kurtcuoglu},
    doi = {10.1016/j.biomaterials.2012.10.007},
    journal = {Biomaterials},
    month = {feb},
    number = {5},
    pages = {1488--1497},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Accelerated endothelial wound healing on microstructured substrates under flow},
    url = {https://doi.org/10.1016%2Fj.biomaterials.2012.10.007},
    volume = {34},
    year = {2013}
    }

  • B. Hejazialhosseini, C. Conti, D. Rossinelli, and P. Koumoutsakos, “High performance CPU kernels for multiphase compressible flows," in Lecture notes in computer science, Springer Berlin Heidelberg, 2013, pp. 216-225.
    [BibTeX] [PDF] [DOI]
    @incollection{hejazialhosseini2013a,
    author = {Babak Hejazialhosseini and Christian Conti and Diego Rossinelli and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-642-38718-0_22},
    pages = {216--225},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {High Performance {CPU} Kernels for Multiphase Compressible Flows},
    url = {https://doi.org/10.1007%2F978-3-642-38718-0_22},
    year = {2013}
    }

  • B. Hejazialhosseini, D. Rossinelli, and P. Koumoutsakos, “3d shock-bubble interaction," Physics of fluids, vol. 25, iss. 9, p. 91105, 2013.
    [BibTeX] [PDF] [DOI]
    @article{hejazialhosseini2013b,
    author = {Babak Hejazialhosseini and Diego Rossinelli and Petros Koumoutsakos},
    doi = {10.1063/1.4820017},
    journal = {Physics of Fluids},
    month = {sep},
    number = {9},
    pages = {091105},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {3D shock-bubble interaction},
    url = {https://doi.org/10.1063%2F1.4820017},
    volume = {25},
    year = {2013}
    }

  • B. Hejazialhosseini, D. Rossinelli, and P. Koumoutsakos, “Vortex dynamics in 3d shock-bubble interaction," Physics of fluids, vol. 25, iss. 11, p. 110816, 2013.
    [BibTeX] [PDF] [DOI]
    @article{hejazialhosseini2013c,
    author = {Babak Hejazialhosseini and Diego Rossinelli and Petros Koumoutsakos},
    doi = {10.1063/1.4819345},
    journal = {Physics of Fluids},
    month = {nov},
    number = {11},
    pages = {110816},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Vortex dynamics in 3D shock-bubble interaction},
    url = {https://doi.org/10.1063%2F1.4819345},
    volume = {25},
    year = {2013}
    }

  • P. Koumoutsakos, I. Pivkin, and F. Milde, “The fluid mechanics of cancer and its therapy," Annual review of fluid mechanics, vol. 45, iss. 1, pp. 325-355, 2013.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2013a,
    author = {Petros Koumoutsakos and Igor Pivkin and Florian Milde},
    doi = {10.1146/annurev-fluid-120710-101102},
    journal = {Annual Review of Fluid Mechanics},
    month = {jan},
    number = {1},
    pages = {325--355},
    publisher = {Annual Reviews},
    section = {Journals},
    title = {The Fluid Mechanics of Cancer and Its Therapy},
    url = {https://doi.org/10.1146%2Fannurev-fluid-120710-101102},
    volume = {45},
    year = {2013}
    }

  • P. Koumoutsakos and J. Feigelman, “Multiscale stochastic simulations of chemical reactions with regulated scale separation," Journal of computational physics, vol. 244, pp. 290-297, 2013.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2013b,
    author = {Petros Koumoutsakos and Justin Feigelman},
    doi = {10.1016/j.jcp.2012.11.030},
    journal = {Journal of Computational Physics},
    month = {jul},
    pages = {290--297},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Multiscale stochastic simulations of chemical reactions with regulated scale separation},
    url = {https://doi.org/10.1016%2Fj.jcp.2012.11.030},
    volume = {244},
    year = {2013}
    }

  • F. Milde, S. Lauw, P. Koumoutsakos, and L. M. Iruela-Arispe, “The mouse retina in 3d: quantification of vascular growth and remodeling," Integrative biology, vol. 5, iss. 12, p. 1426, 2013.
    [BibTeX] [PDF] [DOI]
    @article{milde2013a,
    author = {Florian Milde and Stephanie Lauw and Petros Koumoutsakos and M. Luisa Iruela-Arispe},
    doi = {10.1039/c3ib40085a},
    journal = {Integrative Biology},
    number = {12},
    pages = {1426},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {The mouse retina in 3D: quantification of vascular growth and remodeling},
    url = {https://doi.org/10.1039%2Fc3ib40085a},
    volume = {5},
    year = {2013}
    }

  • W. M. van Rees, M. Gazzola, and P. Koumoutsakos, “Optimal shapes for anguilliform swimmers at intermediate Reynolds numbers," Journal of fluid mechanics, vol. 722, 2013.
    [BibTeX] [PDF] [DOI]
    @article{rees2013a,
    author = {Wim M. van Rees and Mattia Gazzola and Petros Koumoutsakos},
    doi = {10.1017/jfm.2013.157},
    journal = {Journal of Fluid Mechanics},
    month = {apr},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Optimal shapes for anguilliform swimmers at intermediate {R}eynolds numbers},
    url = {https://doi.org/10.1017%2Fjfm.2013.157},
    volume = {722},
    year = {2013}
    }

  • G. Tauriello and P. Koumoutsakos, “Coupling remeshed particle and phase field methods for the simulation of reaction-diffusion on the surface and the interior of deforming geometries," SIAM journal on scientific computing, vol. 35, iss. 6, p. B1285–B1303, 2013.
    [BibTeX] [PDF] [DOI]
    @article{tauriello2013a,
    author = {Gerardo Tauriello and Petros Koumoutsakos},
    doi = {10.1137/130906441},
    journal = {{SIAM} Journal on Scientific Computing},
    month = {jan},
    number = {6},
    pages = {B1285--B1303},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {Coupling Remeshed Particle and Phase Field Methods for the Simulation of Reaction-Diffusion on the Surface and the Interior of Deforming Geometries},
    url = {https://doi.org/10.1137%2F130906441},
    volume = {35},
    year = {2013}
    }

  • J. H. Walther, K. Ritos, E. R. Cruz-Chu, C. M. Megaridis, and P. Koumoutsakos, “Barriers to superfast water transport in carbon nanotube membranes," Nano letters, vol. 13, iss. 5, pp. 1910-1914, 2013.
    [BibTeX] [PDF] [DOI]
    @article{walther2013a,
    author = {Jens H. Walther and Konstantinos Ritos and Eduardo R. Cruz-Chu and Constantine M. Megaridis and Petros Koumoutsakos},
    doi = {10.1021/nl304000k},
    journal = {Nano Letters},
    month = {may},
    number = {5},
    pages = {1910--1914},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Barriers to Superfast Water Transport in Carbon Nanotube Membranes},
    url = {https://doi.org/10.1021%2Fnl304000k},
    volume = {13},
    year = {2013}
    }

2012

  • P. Angelikopoulos, C. Papadimitriou, and P. Koumoutsakos, “Bayesian uncertainty quantification and propagation in molecular dynamics simulations: a high performance computing framework," The journal of chemical physics, vol. 137, iss. 14, p. 144103, 2012.
    [BibTeX] [PDF] [DOI]
    @article{angelikopoulos2012a,
    author = {Panagiotis Angelikopoulos and Costas Papadimitriou and Petros Koumoutsakos},
    doi = {10.1063/1.4757266},
    journal = {The Journal of Chemical Physics},
    month = {oct},
    number = {14},
    pages = {144103},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {{B}ayesian uncertainty quantification and propagation in molecular dynamics simulations: A high performance computing framework},
    url = {https://doi.org/10.1063%2F1.4757266},
    volume = {137},
    year = {2012}
    }

  • C. Conti, D. Rossinelli, and P. Koumoutsakos, “GPU and APU computations of finite time lyapunov exponent fields," Journal of computational physics, vol. 231, iss. 5, pp. 2229-2244, 2012.
    [BibTeX] [PDF] [DOI]
    @article{conti2012a,
    author = {Christian Conti and Diego Rossinelli and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2011.10.032},
    journal = {Journal of Computational Physics},
    month = {mar},
    number = {5},
    pages = {2229--2244},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{GPU} and {APU} computations of Finite Time Lyapunov Exponent fields},
    url = {https://doi.org/10.1016%2Fj.jcp.2011.10.032},
    volume = {231},
    year = {2012}
    }

  • M. Gazzola, V. W. M. Rees, and P. Koumoutsakos, “C-start: optimal start of larval fish," Journal of fluid mechanics, vol. 698, pp. 5-18, 2012.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2012a,
    author = {M. Gazzola and W. M. Van Rees and P. Koumoutsakos},
    doi = {10.1017/jfm.2011.558},
    journal = {Journal of Fluid Mechanics},
    month = {feb},
    pages = {5--18},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {C-start: optimal start of larval fish},
    url = {https://doi.org/10.1017%2Fjfm.2011.558},
    volume = {698},
    year = {2012}
    }

  • M. Gazzola, C. Mimeau, A. A. Tchieu, and P. Koumoutsakos, “Flow mediated interactions between two cylinders at finite re numbers," Physics of fluids, vol. 24, iss. 4, p. 43103, 2012.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2012b,
    author = {Mattia Gazzola and Chloe Mimeau and Andrew A. Tchieu and Petros Koumoutsakos},
    doi = {10.1063/1.4704195},
    journal = {Physics of Fluids},
    month = {apr},
    number = {4},
    pages = {043103},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Flow mediated interactions between two cylinders at finite Re numbers},
    url = {https://doi.org/10.1063%2F1.4704195},
    volume = {24},
    year = {2012}
    }

  • F. Milde, D. Franco, A. Ferrari, V. Kurtcuoglu, D. Poulikakos, and P. Koumoutsakos, “Cell image velocimetry (CIV): boosting the automated quantification of cell migration in wound healing assays," Integrative biology, vol. 4, iss. 11, p. 1437, 2012.
    [BibTeX] [PDF] [DOI]
    @article{milde2012a,
    author = {Florian Milde and Davide Franco and Aldo Ferrari and Vartan Kurtcuoglu and Dimos Poulikakos and Petros Koumoutsakos},
    doi = {10.1039/c2ib20113e},
    journal = {Integrative Biology},
    number = {11},
    pages = {1437},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Cell Image Velocimetry ({CIV}): boosting the automated quantification of cell migration in wound healing assays},
    url = {https://doi.org/10.1039%2Fc2ib20113e},
    volume = {4},
    year = {2012}
    }

  • M. Paolucci, D. Kossman, R. Conte, P. Lukowicz, P. Argyrakis, A. Blandford, G. Bonelli, S. Anderson, S. de Freitas, B. Edmonds, N. Gilbert, M. Gross, J. Kohlhammer, P. Koumoutsakos, A. Krause, B. -O. Linnér, P. Slusallek, O. Sorkine, R. W. Sumner, and D. Helbing, “Towards a living earth simulator," The european physical journal special topics, vol. 214, iss. 1, pp. 77-108, 2012.
    [BibTeX] [PDF] [DOI]
    @article{paolucci2012a,
    author = {M. Paolucci and D. Kossman and R. Conte and P. Lukowicz and P. Argyrakis and A. Blandford and G. Bonelli and S. Anderson and S. de Freitas and B. Edmonds and N. Gilbert and M. Gross and J. Kohlhammer and P. Koumoutsakos and A. Krause and B. -O. Linn{\'{e}}r and P. Slusallek and O. Sorkine and R. W. Sumner and D. Helbing},
    doi = {10.1140/epjst/e2012-01689-8},
    journal = {The European Physical Journal Special Topics},
    month = {nov},
    number = {1},
    pages = {77--108},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Towards a living earth simulator},
    url = {https://doi.org/10.1140%2Fepjst%2Fe2012-01689-8},
    volume = {214},
    year = {2012}
    }

  • W. M. van Rees, F. Hussain, and P. Koumoutsakos, “Vortex tube reconnection at Re = 10^4," Physics of fluids, vol. 24, iss. 7, p. 75105, 2012.
    [BibTeX] [PDF] [DOI]
    @article{rees2012a,
    author = {Wim M. van Rees and Fazle Hussain and Petros Koumoutsakos},
    doi = {10.1063/1.4731809},
    journal = {Physics of Fluids},
    month = {jul},
    number = {7},
    pages = {075105},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Vortex tube reconnection at Re = 10^4},
    url = {https://doi.org/10.1063%2F1.4731809},
    volume = {24},
    year = {2012}
    }

  • J. H. Walther, M. Praprotnik, E. M. Kotsalis, and P. Koumoutsakos, “Multiscale simulation of water flow past a c540 fullerene," Journal of computational physics, vol. 231, iss. 7, pp. 2677-2681, 2012.
    [BibTeX] [PDF] [DOI]
    @article{walther2012a,
    author = {Jens H. Walther and Matej Praprotnik and Evangelos M. Kotsalis and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2011.12.015},
    journal = {Journal of Computational Physics},
    month = {apr},
    number = {7},
    pages = {2677--2681},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Multiscale simulation of water flow past a C540 fullerene},
    url = {https://doi.org/10.1016%2Fj.jcp.2011.12.015},
    volume = {231},
    year = {2012}
    }

2011

  • B. Bayati, P. Chatelain, and P. Koumoutsakos, “Adaptive mesh refinement for stochastic reaction—diffusion processes," Journal of computational physics, vol. 230, iss. 1, pp. 13-26, 2011.
    [BibTeX] [PDF] [DOI]
    @article{bayati2011a,
    author = {Basil Bayati and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2010.08.035},
    journal = {Journal of Computational Physics},
    month = {jan},
    number = {1},
    pages = {13--26},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Adaptive mesh refinement for stochastic reaction{\textendash}diffusion processes},
    url = {https://doi.org/10.1016%2Fj.jcp.2010.08.035},
    volume = {230},
    year = {2011}
    }

  • P. Chatelain, M. Gazzola, S. Kern, and P. Koumoutsakos, “Optimization of aircraft wake alleviation schemes through an evolution strategy," in Lecture notes in computer science, Springer Berlin Heidelberg, 2011, pp. 210-221.
    [BibTeX] [PDF] [DOI]
    @incollection{chatelain2011a,
    author = {Philippe Chatelain and Mattia Gazzola and Stefan Kern and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-642-19328-6_21},
    pages = {210--221},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Optimization of Aircraft Wake Alleviation Schemes through an Evolution Strategy},
    url = {https://doi.org/10.1007%2F978-3-642-19328-6_21},
    year = {2011}
    }

  • M. Gazzola, O. V. Vasilyev, and P. Koumoutsakos, “Shape optimization for drag reduction in linked bodies using evolution strategies," Computers & structures, vol. 89, iss. 11-12, pp. 1224-1231, 2011.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2011a,
    author = {Mattia Gazzola and Oleg V. Vasilyev and Petros Koumoutsakos},
    doi = {10.1016/j.compstruc.2010.09.001},
    journal = {Computers {\&} Structures},
    month = {jun},
    number = {11-12},
    pages = {1224--1231},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Shape optimization for drag reduction in linked bodies using evolution strategies},
    url = {https://doi.org/10.1016%2Fj.compstruc.2010.09.001},
    volume = {89},
    year = {2011}
    }

  • M. Gazzola, P. Chatelain, W. M. van Rees, and P. Koumoutsakos, “Simulations of single and multiple swimmers with non-divergence free deforming geometries," Journal of computational physics, vol. 230, iss. 19, pp. 7093-7114, 2011.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2011b,
    author = {Mattia Gazzola and Philippe Chatelain and Wim M. van Rees and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2011.04.025},
    journal = {Journal of Computational Physics},
    month = {aug},
    number = {19},
    pages = {7093--7114},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Simulations of single and multiple swimmers with non-divergence free deforming geometries},
    url = {https://doi.org/10.1016%2Fj.jcp.2011.04.025},
    volume = {230},
    year = {2011}
    }

  • P. D. Koumoutsakos, B. Bayati, F. Milde, and G. Tauriello, “Particle simulations of morphogenesis," Mathematical models and methods in applied sciences, vol. 21, iss. supp01, pp. 955-1006, 2011.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2011a,
    author = {Petros D. Koumoutsakos and Basil Bayati and Florian Milde and Gerardo Tauriello},
    doi = {10.1142/s021820251100543x},
    journal = {Mathematical Models and Methods in Applied Sciences},
    month = {apr},
    number = {supp01},
    pages = {955--1006},
    publisher = {World Scientific Pub Co Pte Lt},
    section = {Journals},
    title = {Particle Simulations of Morphogenesis},
    url = {https://doi.org/10.1142%2Fs021820251100543x},
    volume = {21},
    year = {2011}
    }

  • W. M. van Rees, A. Leonard, D. I. Pullin, and P. Koumoutsakos, “A comparison of vortex and pseudo-spectral methods for the simulation of periodic vortical flows at high Reynolds numbers," Journal of computational physics, vol. 230, iss. 8, pp. 2794-2805, 2011.
    [BibTeX] [PDF] [DOI]
    @article{rees2011a,
    author = {Wim M. van Rees and Anthony Leonard and D.I. Pullin and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2010.11.031},
    journal = {Journal of Computational Physics},
    month = {apr},
    number = {8},
    pages = {2794--2805},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A comparison of vortex and pseudo-spectral methods for the simulation of periodic vortical flows at high {R}eynolds numbers},
    url = {https://doi.org/10.1016%2Fj.jcp.2010.11.031},
    volume = {230},
    year = {2011}
    }

  • D. Rossinelli, C. Conti, and P. Koumoutsakos, “Mesh-particle interpolations on graphics processing units and multicore central processing units," Philosophical transactions of the royal society a: mathematical, physical and engineering sciences, vol. 369, iss. 1944, pp. 2164-2175, 2011.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2011a,
    author = {D. Rossinelli and C. Conti and P. Koumoutsakos},
    doi = {10.1098/rsta.2011.0074},
    journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
    month = {may},
    number = {1944},
    pages = {2164--2175},
    publisher = {The Royal Society},
    section = {Journals},
    title = {Mesh-particle interpolations on graphics processing units and multicore central processing units},
    url = {https://doi.org/10.1098%2Frsta.2011.0074},
    volume = {369},
    year = {2011}
    }

  • D. Rossinelli, B. Hejazialhosseini, D. G. Spampinato, and P. Koumoutsakos, “Multicore/multi-GPU accelerated simulations of multiphase compressible flows using wavelet adapted grids," SIAM journal on scientific computing, vol. 33, iss. 2, pp. 512-540, 2011.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2011b,
    author = {Diego Rossinelli and Babak Hejazialhosseini and Daniele G. Spampinato and Petros Koumoutsakos},
    doi = {10.1137/100795930},
    journal = {{SIAM} Journal on Scientific Computing},
    month = {jan},
    number = {2},
    pages = {512--540},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {Multicore/Multi-{GPU} Accelerated Simulations of Multiphase Compressible Flows Using Wavelet Adapted Grids},
    url = {https://doi.org/10.1137%2F100795930},
    volume = {33},
    year = {2011}
    }

  • G. Schwank, G. Tauriello, R. Yagi, E. Kranz, P. Koumoutsakos, and K. Basler, “Antagonistic growth regulation by dpp and fat drives uniform cell proliferation," Developmental cell, vol. 20, iss. 1, pp. 123-130, 2011.
    [BibTeX] [PDF] [DOI]
    @article{schwank2011a,
    author = {Gerald Schwank and Gerardo Tauriello and Ryohei Yagi and Elizabeth Kranz and Petros Koumoutsakos and Konrad Basler},
    doi = {10.1016/j.devcel.2010.11.007},
    journal = {Developmental Cell},
    month = {jan},
    number = {1},
    pages = {123--130},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Antagonistic Growth Regulation by Dpp and Fat Drives Uniform Cell Proliferation},
    url = {https://doi.org/10.1016%2Fj.devcel.2010.11.007},
    volume = {20},
    year = {2011}
    }

2010

  • B. Bayati, H. Owhadi, and P. Koumoutsakos, “A cutoff phenomenon in accelerated stochastic simulations of chemical kinetics via flow averaging (FLAVOR-SSA)," The journal of chemical physics, vol. 133, iss. 24, p. 244117, 2010.
    [BibTeX] [PDF] [DOI]
    @article{bayati2010a,
    author = {Basil Bayati and Houman Owhadi and Petros Koumoutsakos},
    doi = {10.1063/1.3518419},
    journal = {The Journal of Chemical Physics},
    month = {dec},
    number = {24},
    pages = {244117},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {A cutoff phenomenon in accelerated stochastic simulations of chemical kinetics via flow averaging ({FLAVOR}-{SSA})},
    url = {https://doi.org/10.1063%2F1.3518419},
    volume = {133},
    year = {2010}
    }

  • P. Chatelain and P. Koumoutsakos, “A fourier-based elliptic solver for vortical flows with periodic and unbounded directions," Journal of computational physics, vol. 229, iss. 7, pp. 2425-2431, 2010.
    [BibTeX] [PDF] [DOI]
    @article{chatelain2010a,
    author = {Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2009.12.035},
    journal = {Journal of Computational Physics},
    month = {apr},
    number = {7},
    pages = {2425--2431},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A Fourier-based elliptic solver for vortical flows with periodic and unbounded directions},
    url = {https://doi.org/10.1016%2Fj.jcp.2009.12.035},
    volume = {229},
    year = {2010}
    }

  • I. Hanasaki, J. H. Walther, S. Kawano, and P. Koumoutsakos, “Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water," Physical review e, vol. 82, iss. 5, 2010.
    [BibTeX] [PDF] [DOI]
    @article{hanasaki2010a,
    author = {Itsuo Hanasaki and Jens H. Walther and Satoyuki Kawano and Petros Koumoutsakos},
    doi = {10.1103/physreve.82.051602},
    journal = {Physical Review E},
    month = {nov},
    number = {5},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water},
    url = {https://doi.org/10.1103%2Fphysreve.82.051602},
    volume = {82},
    year = {2010}
    }

  • B. Hejazialhosseini, D. Rossinelli, M. Bergdorf, and P. Koumoutsakos, “High order finite volume methods on wavelet-adapted grids with local time-stepping on multicore architectures for the simulation of shock-bubble interactions," Journal of computational physics, vol. 229, iss. 22, pp. 8364-8383, 2010.
    [BibTeX] [PDF] [DOI]
    @article{hejazialhosseini2010a,
    author = {Babak Hejazialhosseini and Diego Rossinelli and Michael Bergdorf and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2010.07.021},
    journal = {Journal of Computational Physics},
    month = {nov},
    number = {22},
    pages = {8364--8383},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {High order finite volume methods on wavelet-adapted grids with local time-stepping on multicore architectures for the simulation of shock-bubble interactions},
    url = {https://doi.org/10.1016%2Fj.jcp.2010.07.021},
    volume = {229},
    year = {2010}
    }

  • E. M. Kotsalis, I. Hanasaki, J. H. Walther, and P. Koumoutsakos, “Non-periodic molecular dynamics simulations of coarse grained lipid bilayer in water," Computers & mathematics with applications, vol. 59, iss. 7, pp. 2370-2373, 2010.
    [BibTeX] [PDF] [DOI]
    @article{kotsalis2010a,
    author = {E.M. Kotsalis and I. Hanasaki and J.H. Walther and P. Koumoutsakos},
    doi = {10.1016/j.camwa.2009.08.054},
    journal = {Computers {\&} Mathematics with Applications},
    month = {apr},
    number = {7},
    pages = {2370--2373},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Non-periodic Molecular Dynamics simulations of coarse grained lipid bilayer in water},
    url = {https://doi.org/10.1016%2Fj.camwa.2009.08.054},
    volume = {59},
    year = {2010}
    }

  • G. Morra, D. A. Yuen, L. Boschi, P. Chatelain, P. Koumoutsakos, and P. J. Tackley, “The fate of the slabs interacting with a density/viscosity hill in the mid-mantle," Physics of the earth and planetary interiors, vol. 180, iss. 3-4, pp. 271-282, 2010.
    [BibTeX] [PDF] [DOI]
    @article{morra2010a,
    author = {G. Morra and D.A. Yuen and L. Boschi and P. Chatelain and P. Koumoutsakos and P.J. Tackley},
    doi = {10.1016/j.pepi.2010.04.001},
    journal = {Physics of the Earth and Planetary Interiors},
    month = {jun},
    number = {3-4},
    pages = {271--282},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {The fate of the slabs interacting with a density/viscosity hill in the mid-mantle},
    url = {https://doi.org/10.1016%2Fj.pepi.2010.04.001},
    volume = {180},
    year = {2010}
    }

  • D. Rossinelli, M. Bergdorf, G. Cottet, and P. Koumoutsakos, “GPU accelerated simulations of bluff body flows using vortex particle methods," Journal of computational physics, vol. 229, iss. 9, pp. 3316-3333, 2010.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2010a,
    author = {Diego Rossinelli and Michael Bergdorf and Georges-Henri Cottet and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2010.01.004},
    journal = {Journal of Computational Physics},
    month = {may},
    number = {9},
    pages = {3316--3333},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{GPU} accelerated simulations of bluff body flows using vortex particle methods},
    url = {https://doi.org/10.1016%2Fj.jcp.2010.01.004},
    volume = {229},
    year = {2010}
    }

  • D. Rossinelli, B. Hejazialhosseini, M. Bergdorf, and P. Koumoutsakos, “Wavelet-adaptive solvers on multi-core architectures for the simulation of complex systems," Concurrency and computation: practice and experience, vol. 23, iss. 2, pp. 172-186, 2010.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2010b,
    author = {Diego Rossinelli and Babak Hejazialhosseini and Michael Bergdorf and Petros Koumoutsakos},
    doi = {10.1002/cpe.1639},
    journal = {Concurrency and Computation: Practice and Experience},
    month = {aug},
    number = {2},
    pages = {172--186},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Wavelet-adaptive solvers on multi-core architectures for the simulation of complex systems},
    url = {https://doi.org/10.1002%2Fcpe.1639},
    volume = {23},
    year = {2010}
    }

2009

  • B. Bayati, P. Chatelain, and P. Koumoutsakos, “D-leaping: accelerating stochastic simulation algorithms for reactions with delays," Journal of computational physics, vol. 228, iss. 16, pp. 5908-5916, 2009.
    [BibTeX] [PDF] [DOI]
    @article{bayati2009a,
    author = {Basil Bayati and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2009.05.004},
    journal = {Journal of Computational Physics},
    month = {sep},
    number = {16},
    pages = {5908--5916},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {D-leaping: Accelerating stochastic simulation algorithms for reactions with delays},
    url = {https://doi.org/10.1016%2Fj.jcp.2009.05.004},
    volume = {228},
    year = {2009}
    }

  • M. Bergdorf, I. F. Sbalzarini, and P. Koumoutsakos, “A lagrangian particle method for reaction—diffusion systems on deforming surfaces," Journal of mathematical biology, vol. 61, iss. 5, pp. 649-663, 2009.
    [BibTeX] [PDF] [DOI]
    @article{bergdorf2009a,
    author = {Michael Bergdorf and Ivo F. Sbalzarini and Petros Koumoutsakos},
    doi = {10.1007/s00285-009-0315-2},
    journal = {Journal of Mathematical Biology},
    month = {dec},
    number = {5},
    pages = {649--663},
    publisher = {Springer Nature},
    section = {Journals},
    title = {A Lagrangian particle method for reaction{\textendash}diffusion systems on deforming surfaces},
    url = {https://doi.org/10.1007%2Fs00285-009-0315-2},
    volume = {61},
    year = {2009}
    }

  • B. L. Falcón, H. Hashizume, P. Koumoutsakos, J. Chou, J. V. Bready, A. Coxon, J. D. Oliner, and D. M. McDonald, “Contrasting actions of selective inhibitors of angiopoietin-1 and angiopoietin-2 on the normalization of tumor blood vessels," The american journal of pathology, vol. 175, iss. 5, pp. 2159-2170, 2009.
    [BibTeX] [PDF] [DOI]
    @article{falcon2009a,
    author = {Beverly L. Falc{\'{o}}n and Hiroya Hashizume and Petros Koumoutsakos and Jeyling Chou and James V. Bready and Angela Coxon and Jonathan D. Oliner and Donald M. McDonald},
    doi = {10.2353/ajpath.2009.090391},
    journal = {The American Journal of Pathology},
    month = {nov},
    number = {5},
    pages = {2159--2170},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Contrasting Actions of Selective Inhibitors of Angiopoietin-1 and Angiopoietin-2 on the Normalization of Tumor Blood Vessels},
    url = {https://doi.org/10.2353%2Fajpath.2009.090391},
    volume = {175},
    year = {2009}
    }

  • M. Gazzola, C. J. Burckhardt, B. Bayati, M. Engelke, U. F. Greber, and P. Koumoutsakos, “A stochastic model for microtubule motors describes the in vivo cytoplasmic transport of human adenovirus," PLoS computational biology, vol. 5, iss. 12, p. e1000623, 2009.
    [BibTeX] [PDF] [DOI]
    @article{gazzola2009a,
    author = {Mattia Gazzola and Christoph J. Burckhardt and Basil Bayati and Martin Engelke and Urs F. Greber and Petros Koumoutsakos},
    doi = {10.1371/journal.pcbi.1000623},
    editor = {Herbert M. Sauro},
    journal = {{PLoS} Computational Biology},
    month = {dec},
    number = {12},
    pages = {e1000623},
    publisher = {Public Library of Science ({PLoS})},
    section = {Journals},
    title = {A Stochastic Model for Microtubule Motors Describes the In Vivo Cytoplasmic Transport of Human Adenovirus},
    url = {https://doi.org/10.1371%2Fjournal.pcbi.1000623},
    volume = {5},
    year = {2009}
    }

  • T. Gebäck and P. Koumoutsakos, “Edge detection in microscopy images using curvelets," BMC bioinformatics, vol. 10, iss. 1, p. 75, 2009.
    [BibTeX] [PDF] [DOI]
    @article{geback2009a,
    author = {Tobias Geb{\"a}ck and Petros Koumoutsakos},
    doi = {10.1186/1471-2105-10-75},
    journal = {{BMC} Bioinformatics},
    number = {1},
    pages = {75},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Edge detection in microscopy images using curvelets},
    url = {https://doi.org/10.1186%2F1471-2105-10-75},
    volume = {10},
    year = {2009}
    }

  • T. Gebäck, M. Schulz, P. Koumoutsakos, and M. Detmar, “Tscratch: a novel and simple software tool for automated analysis of monolayer wound healing assays.," Biotechniques, vol. 46, iss. 4, pp. 265-274, 2009.
    [BibTeX] [PDF] [DOI]
    @article{geback2009b,
    author = {Geb{\"a}ck, Tobias and Schulz, MM and Koumoutsakos, Petros and Detmar, Michael},
    doi = {10.2144/000113083},
    journal = {Biotechniques},
    number = {4},
    pages = {265--274},
    section = {Journals},
    title = {TScratch: a novel and simple software tool for automated analysis of monolayer wound healing assays.},
    volume = {46},
    year = {2009}
    }

  • P. Gonnet, J. H. Walther, and P. Koumoutsakos, “ϑ-SHAKE: an extension to SHAKE for the explicit treatment of angular constraints," Computer physics communications, vol. 180, iss. 3, pp. 360-364, 2009.
    [BibTeX] [PDF] [DOI]
    @article{gonnet2009a,
    author = {Pedro Gonnet and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1016/j.cpc.2008.10.020},
    journal = {Computer Physics Communications},
    month = {mar},
    number = {3},
    pages = {360--364},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{\vartheta}-{SHAKE}: An extension to {SHAKE} for the explicit treatment of angular constraints},
    url = {https://doi.org/10.1016%2Fj.cpc.2008.10.020},
    volume = {180},
    year = {2009}
    }

  • N. Hansen, A. S. P. Niederberger, L. Guzzella, and P. Koumoutsakos, “A method for handling uncertainty in evolutionary optimization with an application to feedback control of combustion," IEEE transactions on evolutionary computation, vol. 13, iss. 1, pp. 180-197, 2009.
    [BibTeX] [PDF] [DOI]
    @article{hansen2009a,
    author = {N. Hansen and A.S.P. Niederberger and L. Guzzella and P. Koumoutsakos},
    doi = {10.1109/tevc.2008.924423},
    journal = {{IEEE} Transactions on Evolutionary Computation},
    month = {feb},
    number = {1},
    pages = {180--197},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {A Method for Handling Uncertainty in Evolutionary Optimization With an Application to Feedback Control of Combustion},
    url = {https://doi.org/10.1109%2Ftevc.2008.924423},
    volume = {13},
    year = {2009}
    }

  • E. M. Kotsalis, J. H. Walther, E. Kaxiras, and P. Koumoutsakos, “Control algorithm for multiscale flow simulations of water," Physical review e, vol. 79, iss. 4, 2009.
    [BibTeX] [PDF] [DOI]
    @article{kotsalis2009a,
    author = {Evangelos M. Kotsalis and Jens H. Walther and Efthimios Kaxiras and Petros Koumoutsakos},
    doi = {10.1103/physreve.79.045701},
    journal = {Physical Review E},
    month = {apr},
    number = {4},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Control algorithm for multiscale flow simulations of water},
    url = {https://doi.org/10.1103%2Fphysreve.79.045701},
    volume = {79},
    year = {2009}
    }

  • E. Mjolsness, D. Orendorff, P. Chatelain, and P. Koumoutsakos, “An exact accelerated stochastic simulation algorithm," The journal of chemical physics, vol. 130, iss. 14, p. 144110, 2009.
    [BibTeX] [PDF] [DOI]
    @article{mjolsness2009a,
    author = {Eric Mjolsness and David Orendorff and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1063/1.3078490},
    journal = {The Journal of Chemical Physics},
    month = {apr},
    number = {14},
    pages = {144110},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {An exact accelerated stochastic simulation algorithm},
    url = {https://doi.org/10.1063%2F1.3078490},
    volume = {130},
    year = {2009}
    }

  • D. Rossinelli, M. Bergdorf, B. Hejazialhosseini, and P. Koumoutsakos, “Wavelet-based adaptive solvers on multi-core architectures for the simulation of complex systems," in Lecture notes in computer science, Springer Berlin Heidelberg, 2009, pp. 721-734.
    [BibTeX] [PDF] [DOI]
    @incollection{rossinelli2009a,
    author = {Diego Rossinelli and Michael Bergdorf and Babak Hejazialhosseini and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-642-03869-3_68},
    pages = {721--734},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Wavelet-Based Adaptive Solvers on Multi-core Architectures for the Simulation of Complex Systems},
    url = {https://doi.org/10.1007%2F978-3-642-03869-3_68},
    year = {2009}
    }

  • H. A. Zambrano, J. H. Walther, P. Koumoutsakos, and I. F. Sbalzarini, “Thermophoretic motion of water nanodroplets confined inside carbon nanotubes," Nano letters, vol. 9, iss. 1, pp. 66-71, 2009.
    [BibTeX] [PDF] [DOI]
    @article{zambrano2009b,
    author = {Harvey A. Zambrano and Jens H. Walther and Petros Koumoutsakos and Ivo F. Sbalzarini},
    doi = {10.1021/nl802429s},
    journal = {Nano Letters},
    month = {jan},
    number = {1},
    pages = {66--71},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Thermophoretic Motion of Water Nanodroplets Confined inside Carbon Nanotubes},
    url = {https://doi.org/10.1021%2Fnl802429s},
    volume = {9},
    year = {2009}
    }

2008

  • B. Bayati, P. Chatelain, and P. Koumoutsakos, “Multiresolution stochastic simulations of reaction—diffusion processes," Physical chemistry chemical physics, vol. 10, iss. 39, p. 5963, 2008.
    [BibTeX] [PDF] [DOI]
    @article{bayati2008a,
    author = {Basil Bayati and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1039/b810795e},
    journal = {Physical Chemistry Chemical Physics},
    number = {39},
    pages = {5963},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Multiresolution stochastic simulations of reaction{\textendash}diffusion processes},
    url = {https://doi.org/10.1039%2Fb810795e},
    volume = {10},
    year = {2008}
    }

  • P. Chatelain, A. Curioni, M. Bergdorf, D. Rossinelli, W. Andreoni, and P. Koumoutsakos, “Vortex methods for massively parallel computer architectures," High performance computing for computational science-vecpar 2008, pp. 479-489, 2008.
    [BibTeX] [PDF] [DOI]
    @article{chatelain2008a,
    author = {Chatelain, Philippe and Curioni, Alessandro and Bergdorf, Michael and Rossinelli, Diego and Andreoni, Wanda and Koumoutsakos, Petros},
    doi = {10.1007/978-3-540-92859-1_42},
    journal = {High Performance Computing for Computational Science-VECPAR 2008},
    pages = {479--489},
    publisher = {Springer},
    section = {Journals},
    title = {Vortex methods for massively parallel computer architectures},
    year = {2008}
    }

  • P. Chatelain, A. Curioni, M. Bergdorf, D. Rossinelli, W. Andreoni, and P. Koumoutsakos, “Billion vortex particle direct numerical simulations of aircraft wakes," Computer methods in applied mechanics and engineering, vol. 197, iss. 13-16, pp. 1296-1304, 2008.
    [BibTeX] [PDF] [DOI]
    @article{chatelain2008b,
    author = {Philippe Chatelain and Alessandro Curioni and Michael Bergdorf and Diego Rossinelli and Wanda Andreoni and Petros Koumoutsakos},
    doi = {10.1016/j.cma.2007.11.016},
    journal = {Computer Methods in Applied Mechanics and Engineering},
    month = {feb},
    number = {13-16},
    pages = {1296--1304},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Billion vortex particle direct numerical simulations of aircraft wakes},
    url = {https://doi.org/10.1016%2Fj.cma.2007.11.016},
    volume = {197},
    year = {2008}
    }

  • A. Dupuis, P. Chatelain, and P. Koumoutsakos, “An immersed boundary—lattice-boltzmann method for the simulation of the flow past an impulsively started cylinder," Journal of computational physics, vol. 227, iss. 9, pp. 4486-4498, 2008.
    [BibTeX] [PDF] [DOI]
    @article{dupuis2008a,
    author = {Alexandre Dupuis and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2008.01.009},
    journal = {Journal of Computational Physics},
    month = {apr},
    number = {9},
    pages = {4486--4498},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {An immersed boundary{\textendash}lattice-Boltzmann method for the simulation of the flow past an impulsively started cylinder},
    url = {https://doi.org/10.1016%2Fj.jcp.2008.01.009},
    volume = {227},
    year = {2008}
    }

  • K. Fukagata, S. Kern, P. Chatelain, P. Koumoutsakos, and N. Kasagi, “Evolutionary optimization of an anisotropic compliant surface for turbulent friction drag reduction," Journal of turbulence, vol. 9, 2008.
    [BibTeX] [PDF] [DOI]
    @article{fukagata2008a,
    author = {Koji Fukagata and Stefan Kern and Philippe Chatelain and Petros Koumoutsakos and Nobuhide Kasagi},
    doi = {10.1080/14685240802441126},
    journal = {Journal of Turbulence},
    publisher = {Informa {UK} Limited},
    section = {Journals},
    title = {Evolutionary optimization of an anisotropic compliant surface for turbulent friction drag reduction},
    url = {https://doi.org/10.1080%2F14685240802441126},
    volume = {9},
    year = {2008}
    }

  • S. E. Hieber and P. Koumoutsakos, “An immersed boundary method for smoothed particle hydrodynamics of self-propelled swimmers," Journal of computational physics, vol. 227, iss. 19, pp. 8636-8654, 2008.
    [BibTeX] [PDF] [DOI]
    @article{hieber2008a,
    author = {S.E. Hieber and P. Koumoutsakos},
    doi = {10.1016/j.jcp.2008.06.017},
    journal = {Journal of Computational Physics},
    month = {oct},
    number = {19},
    pages = {8636--8654},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {An immersed boundary method for smoothed particle hydrodynamics of self-propelled swimmers},
    url = {https://doi.org/10.1016%2Fj.jcp.2008.06.017},
    volume = {227},
    year = {2008}
    }

  • S. E. Hieber and P. Koumoutsakos, “A lagrangian particle method for the simulation of linear and nonlinear elastic models of soft tissue," Journal of computational physics, vol. 227, iss. 21, pp. 9195-9215, 2008.
    [BibTeX] [PDF] [DOI]
    @article{hieber2008b,
    author = {Simone E. Hieber and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2008.05.016},
    journal = {Journal of Computational Physics},
    month = {nov},
    number = {21},
    pages = {9195--9215},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A Lagrangian particle method for the simulation of linear and nonlinear elastic models of soft tissue},
    url = {https://doi.org/10.1016%2Fj.jcp.2008.05.016},
    volume = {227},
    year = {2008}
    }

  • E. M. Kotsalis and P. Koumoutsakos, “A control algorithm for multiscale simulations of liquid water," in Computational science — ICCS 2008, Springer Berlin Heidelberg, 2008, pp. 234-241.
    [BibTeX] [PDF] [DOI]
    @incollection{kotsalis2008a,
    author = {Evangelos M. Kotsalis and Petros Koumoutsakos},
    booktitle = {Computational Science {\textendash} {ICCS} 2008},
    doi = {10.1007/978-3-540-69387-1_26},
    pages = {234--241},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {A Control Algorithm for Multiscale Simulations of Liquid Water},
    url = {https://doi.org/10.1007%2F978-3-540-69387-1_26},
    year = {2008}
    }

  • P. Koumoutsakos, “Multiscale modeling and simulation for fluid mechanics at the nanoscale," Carbon nanotube devices: properties, modeling, integration and applications, pp. 229-290, 2008.
    [BibTeX] [DOI]
    @article{koumoutsakos2008a,
    author = {Koumoutsakos, Petros},
    doi = {10.1002/9783527622597.ch6},
    journal = {Carbon Nanotube Devices: Properties, Modeling, Integration and Applications},
    pages = {229--290},
    publisher = {Wiley Online Library},
    section = {Journals},
    title = {Multiscale Modeling and Simulation for Fluid Mechanics at the Nanoscale},
    year = {2008}
    }

  • F. Milde, M. Bergdorf, and P. Koumoutsakos, “A hybrid model of sprouting angiogenesis," in Computational science — ICCS 2008, Springer Berlin Heidelberg, 2008, pp. 167-176.
    [BibTeX] [PDF] [DOI]
    @incollection{milde2008a,
    author = {Florian Milde and Michael Bergdorf and Petros Koumoutsakos},
    booktitle = {Computational Science {\textendash} {ICCS} 2008},
    doi = {10.1007/978-3-540-69387-1_19},
    pages = {167--176},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {A Hybrid Model of Sprouting Angiogenesis},
    url = {https://doi.org/10.1007%2F978-3-540-69387-1_19},
    year = {2008}
    }

  • F. Milde, M. Bergdorf, and P. Koumoutsakos, “A hybrid model for three-dimensional simulations of sprouting angiogenesis," Biophysical journal, vol. 95, iss. 7, pp. 3146-3160, 2008.
    [BibTeX] [PDF] [DOI]
    @article{milde2008b,
    author = {Florian Milde and Michael Bergdorf and Petros Koumoutsakos},
    doi = {10.1529/biophysj.107.124511},
    journal = {Biophysical Journal},
    month = {oct},
    number = {7},
    pages = {3146--3160},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A Hybrid Model for Three-Dimensional Simulations of Sprouting Angiogenesis},
    url = {https://doi.org/10.1529%2Fbiophysj.107.124511},
    volume = {95},
    year = {2008}
    }

  • G. Morra, P. Chatelain, P. Tackley, and P. Koumoutsakos, “Earth curvature effects on subduction morphology: modeling subduction in a spherical setting," Acta geotechnica, vol. 4, iss. 2, pp. 95-105, 2008.
    [BibTeX] [PDF] [DOI]
    @article{morra2008a,
    author = {Gabriele Morra and Philippe Chatelain and Paul Tackley and Petros Koumoutsakos},
    doi = {10.1007/s11440-008-0060-5},
    journal = {Acta Geotechnica},
    month = {may},
    number = {2},
    pages = {95--105},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Earth curvature effects on subduction morphology: Modeling subduction in a spherical setting},
    url = {https://doi.org/10.1007%2Fs11440-008-0060-5},
    volume = {4},
    year = {2008}
    }

  • P. Poncet, R. Hildebrand, G. -H. Cottet, and P. Koumoutsakos, “Spatially distributed control for optimal drag reduction of the flow past a circular cylinder," Journal of fluid mechanics, vol. 599, 2008.
    [BibTeX] [DOI]
    @article{poncet2008a,
    author = {Poncet, P. and Hildebrand, R. and Cottet, G.-H. and Koumoutsakos, P.},
    doi = {10.1017/s0022112008000177},
    journal = {Journal of Fluid Mechanics},
    month = {mar},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Spatially distributed control for optimal drag reduction of the flow past a circular cylinder},
    url = {https://doi.org/10.1017%2Fs0022112008000177},
    volume = {599},
    year = {2008}
    }

  • D. Rossinelli and P. Koumoutsakos, “Vortex methods for incompressible flow simulations on the GPU," The visual computer, vol. 24, iss. 7-9, pp. 699-708, 2008.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2008a,
    author = {Diego Rossinelli and Petros Koumoutsakos},
    doi = {10.1007/s00371-008-0250-z},
    journal = {The Visual Computer},
    month = {may},
    number = {7-9},
    pages = {699--708},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Vortex methods for incompressible flow simulations on the {GPU}},
    url = {https://doi.org/10.1007%2Fs00371-008-0250-z},
    volume = {24},
    year = {2008}
    }

  • D. Rossinelli, B. Bayati, and P. Koumoutsakos, “Accelerated stochastic and hybrid methods for spatial simulations of reaction—diffusion systems," Chemical physics letters, vol. 451, iss. 1-3, pp. 136-140, 2008.
    [BibTeX] [PDF] [DOI]
    @article{rossinelli2008b,
    author = {Diego Rossinelli and Basil Bayati and Petros Koumoutsakos},
    doi = {10.1016/j.cplett.2007.11.055},
    journal = {Chemical Physics Letters},
    month = {jan},
    number = {1-3},
    pages = {136--140},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Accelerated stochastic and hybrid methods for spatial simulations of reaction{\textendash}diffusion systems},
    url = {https://doi.org/10.1016%2Fj.cplett.2007.11.055},
    volume = {451},
    year = {2008}
    }

  • U. Zimmerli and P. Koumoutsakos, “Simulations of electrophoretic RNA transport through transmembrane carbon nanotubes," Biophysical journal, vol. 94, iss. 7, pp. 2546-2557, 2008.
    [BibTeX] [PDF] [DOI]
    @article{zimmerli2008a,
    author = {Urs Zimmerli and Petros Koumoutsakos},
    doi = {10.1529/biophysj.106.102467},
    journal = {Biophysical Journal},
    month = {apr},
    number = {7},
    pages = {2546--2557},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Simulations of Electrophoretic {RNA} Transport Through Transmembrane Carbon Nanotubes},
    url = {https://doi.org/10.1529%2Fbiophysj.106.102467},
    volume = {94},
    year = {2008}
    }

2007

  • A. M. Altenhoff, J. H. Walther, and P. Koumoutsakos, “A stochastic boundary forcing for dissipative particle dynamics," Journal of computational physics, vol. 225, iss. 1, pp. 1125-1136, 2007.
    [BibTeX] [PDF] [DOI]
    @article{altenhoff2007a,
    author = {Adrian M. Altenhoff and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2007.01.015},
    journal = {Journal of Computational Physics},
    month = {jul},
    number = {1},
    pages = {1125--1136},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A stochastic boundary forcing for dissipative particle dynamics},
    url = {https://doi.org/10.1016%2Fj.jcp.2007.01.015},
    volume = {225},
    year = {2007}
    }

  • M. Bergdorf, P. Koumoutsakos, and A. Leonard, “Direct numerical simulations of vortex rings at Re_Γ= 7500," Journal of fluid mechanics, vol. 581, pp. 495-505, 2007.
    [BibTeX] [PDF]
    @article{bergdorf2007a,
    author = {Bergdorf, Michael and Koumoutsakos, Petros and Leonard, Anthony},
    journal = {Journal of Fluid Mechanics},
    pages = {495--505},
    publisher = {Cambridge University Press},
    section = {Journals},
    title = {Direct numerical simulations of vortex rings at Re_\Gamma= 7500},
    volume = {581},
    year = {2007}
    }

  • P. Chatelain, G. -H. Cottet, and P. Koumoutsakos, “Particle mesh hydrodynamics for astrophysics simulations," International journal of modern physics c, vol. 18, iss. 04, pp. 610-618, 2007.
    [BibTeX] [PDF] [DOI]
    @article{chatelain2007a,
    author = {Chatelain, P. and Cottet, G.-H. and Koumoutsakos, P.},
    doi = {10.1142/s0129183107010851},
    journal = {International Journal of Modern Physics C},
    month = {apr},
    number = {04},
    pages = {610--618},
    publisher = {World Scientific Pub Co Pte Lt},
    section = {Journals},
    title = {Particle Mesh Hydrodynamics for Astrophysics Simulations},
    url = {https://doi.org/10.1142%2Fs0129183107010851},
    volume = {18},
    year = {2007}
    }

  • A. Dupuis and P. Koumoutsakos, “Effects of atomistic domain size on hybrid lattice boltzmann—molecular dynamics simulations of dense fluids," International journal of modern physics c, vol. 18, iss. 04, pp. 644-651, 2007.
    [BibTeX] [PDF] [DOI]
    @article{dupuis2007a,
    author = {Dupuis, A. and Koumoutsakos, P.},
    doi = {10.1142/s0129183107010899},
    journal = {International Journal of Modern Physics C},
    month = {apr},
    number = {04},
    pages = {644--651},
    publisher = {World Scientific Pub Co Pte Lt},
    section = {Journals},
    title = {Effects of Atomistic Domain Size on Hybrid Lattice Boltzmann{\textendash}Molecular Dynamics Simulations of Dense Fluids},
    url = {https://doi.org/10.1142%2Fs0129183107010899},
    volume = {18},
    year = {2007}
    }

  • A. Dupuis, E. M. Kotsalis, and P. Koumoutsakos, “Coupling lattice boltzmann and molecular dynamics models for dense fluids," Physical review e, vol. 75, iss. 4, 2007.
    [BibTeX] [PDF] [DOI]
    @article{dupuis2007b,
    author = {A. Dupuis and E. M. Kotsalis and P. Koumoutsakos},
    doi = {10.1103/physreve.75.046704},
    journal = {Physical Review E},
    month = {apr},
    number = {4},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Coupling lattice Boltzmann and molecular dynamics models for dense fluids},
    url = {https://doi.org/10.1103%2Fphysreve.75.046704},
    volume = {75},
    year = {2007}
    }

  • J. A. Helmuth, C. J. Burckhardt, P. Koumoutsakos, U. F. Greber, and I. F. Sbalzarini, “A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells," Journal of structural biology, vol. 159, iss. 3, pp. 347-358, 2007.
    [BibTeX] [PDF] [DOI]
    @article{helmuth2007a,
    author = {Jo A. Helmuth and Christoph J. Burckhardt and Petros Koumoutsakos and Urs F. Greber and Ivo F. Sbalzarini},
    doi = {10.1016/j.jsb.2007.04.003},
    journal = {Journal of Structural Biology},
    month = {sep},
    number = {3},
    pages = {347--358},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells},
    url = {https://doi.org/10.1016%2Fj.jsb.2007.04.003},
    volume = {159},
    year = {2007}
    }

  • S. Kern, P. Koumoutsakos, and K. Eschler, “Optimization of anguilliform swimming," Physics of fluids, vol. 19, iss. 9, p. 91102, 2007.
    [BibTeX] [PDF] [DOI]
    @article{kern2007a,
    author = {S. Kern and P. Koumoutsakos and Kristina Eschler},
    doi = {10.1063/1.2774981},
    journal = {Physics of Fluids},
    month = {sep},
    number = {9},
    pages = {091102},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Optimization of anguilliform swimming},
    url = {https://doi.org/10.1063%2F1.2774981},
    volume = {19},
    year = {2007}
    }

  • E. M. Kotsalis, J. H. Walther, and P. Koumoutsakos, “Control of density fluctuations in atomistic-continuum simulations of dense liquids," Physical review e, vol. 76, iss. 1, 2007.
    [BibTeX] [PDF] [DOI]
    @article{kotsalis2007a,
    author = {E. M. Kotsalis and J. H. Walther and P. Koumoutsakos},
    doi = {10.1103/physreve.76.016709},
    journal = {Physical Review E},
    month = {jul},
    number = {1},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Control of density fluctuations in atomistic-continuum simulations of dense liquids},
    url = {https://doi.org/10.1103%2Fphysreve.76.016709},
    volume = {76},
    year = {2007}
    }

  • J. O. Ramsay, G. Hooker, D. Campbell, and J. Cao, “Parameter estimation for differential equations: a generalized smoothing approach," Journal of the royal statistical society: series b (statistical methodology), vol. 69, iss. 5, pp. 741-796, 2007.
    [BibTeX] [DOI]
    @article{ramsay2007a,
    author = {J. O. Ramsay and G. Hooker and D. Campbell and J. Cao},
    doi = {10.1111/j.1467-9868.2007.00610.x},
    journal = {Journal of the Royal Statistical Society: Series B (Statistical Methodology)},
    month = {oct},
    number = {5},
    pages = {741--796},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Parameter estimation for differential equations: a generalized smoothing approach},
    url = {https://doi.org/10.1111%2Fj.1467-9868.2007.00610.x},
    volume = {69},
    year = {2007}
    }

  • P. A. E. Schoen, J. H. Walther, D. Poulikakos, and P. Koumoutsakos, “Phonon assisted thermophoretic motion of gold nanoparticles inside carbon nanotubes," Applied physics letters, vol. 90, iss. 25, p. 253116, 2007.
    [BibTeX] [PDF] [DOI]
    @article{schoen2007a,
    author = {Philipp A. E. Schoen and Jens H. Walther and Dimos Poulikakos and Petros Koumoutsakos},
    doi = {10.1063/1.2748367},
    journal = {Applied Physics Letters},
    month = {jun},
    number = {25},
    pages = {253116},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Phonon assisted thermophoretic motion of gold nanoparticles inside carbon nanotubes},
    url = {https://doi.org/10.1063%2F1.2748367},
    volume = {90},
    year = {2007}
    }

2006

  • A. Auger, P. Chatelain, and P. Koumoutsakos, “R-leaping: accelerating the stochastic simulation algorithm by reaction leaps," The journal of chemical physics, vol. 125, iss. 8, p. 84103, 2006.
    [BibTeX] [PDF] [DOI]
    @article{auger2006a,
    author = {Anne Auger and Philippe Chatelain and Petros Koumoutsakos},
    doi = {10.1063/1.2218339},
    journal = {The Journal of Chemical Physics},
    month = {aug},
    number = {8},
    pages = {084103},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {R-leaping: Accelerating the stochastic simulation algorithm by reaction leaps},
    url = {https://doi.org/10.1063%2F1.2218339},
    volume = {125},
    year = {2006}
    }

  • M. Bergdorf and P. Koumoutsakos, “A lagrangian particle-wavelet method," Multiscale modeling & simulation, vol. 5, iss. 3, pp. 980-995, 2006.
    [BibTeX] [PDF] [DOI]
    @article{bergdorf2006a,
    author = {Michael Bergdorf and Petros Koumoutsakos},
    doi = {10.1137/060652877},
    journal = {Multiscale Modeling {\&} Simulation},
    month = {jan},
    number = {3},
    pages = {980--995},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {A Lagrangian Particle-Wavelet Method},
    url = {https://doi.org/10.1137%2F060652877},
    volume = {5},
    year = {2006}
    }

  • K. Fukagata, N. Kasagi, and P. Koumoutsakos, “A theoretical prediction of friction drag reduction in turbulent flow by superhydrophobic surfaces," Physics of fluids, vol. 18, iss. 5, p. 51703, 2006.
    [BibTeX] [PDF] [DOI]
    @article{fukagata2006a,
    author = {Koji Fukagata and Nobuhide Kasagi and Petros Koumoutsakos},
    doi = {10.1063/1.2205307},
    journal = {Physics of Fluids},
    month = {may},
    number = {5},
    pages = {051703},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {A theoretical prediction of friction drag reduction in turbulent flow by superhydrophobic surfaces},
    url = {https://doi.org/10.1063%2F1.2205307},
    volume = {18},
    year = {2006}
    }

  • N. Hansen, F. Gemperle, A. Auger, and P. Koumoutsakos, “When do heavy-tail distributions help?," in Parallel problem solving from nature – PPSN IX, Springer Berlin Heidelberg, 2006, pp. 62-71.
    [BibTeX] [PDF] [DOI]
    @incollection{hansen2006b,
    author = {Nikolaus Hansen and Fabian Gemperle and Anne Auger and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature - {PPSN} {IX}},
    doi = {10.1007/11844297_7},
    pages = {62--71},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {When Do Heavy-Tail Distributions Help?},
    url = {https://doi.org/10.1007%2F11844297_7},
    year = {2006}
    }

  • S. Kern, N. Hansen, and P. Koumoutsakos, “Local meta-models for optimization using evolution strategies," in Parallel problem solving from nature – PPSN IX, Springer Berlin Heidelberg, 2006, pp. 939-948.
    [BibTeX] [PDF] [DOI]
    @incollection{kern2006a,
    author = {Stefan Kern and Nikolaus Hansen and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature - {PPSN} {IX}},
    doi = {10.1007/11844297_95},
    pages = {939--948},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Local Meta-models for Optimization Using Evolution Strategies},
    url = {https://doi.org/10.1007%2F11844297_95},
    year = {2006}
    }

  • S. Kern and P. Koumoutsakos, “Simulations of optimized anguilliform swimming," Journal of experimental biology, vol. 209, iss. 24, pp. 4841-4857, 2006.
    [BibTeX] [PDF] [DOI]
    @article{kern2006b,
    author = {S. Kern and P. Koumoutsakos},
    doi = {10.1242/jeb.02526},
    journal = {Journal of Experimental Biology},
    month = {dec},
    number = {24},
    pages = {4841--4857},
    publisher = {The Company of Biologists},
    section = {Journals},
    title = {Simulations of optimized anguilliform swimming},
    url = {https://doi.org/10.1242%2Fjeb.02526},
    volume = {209},
    year = {2006}
    }

  • P. Koumoutsakos and S. D. Müller, “Flow optimization using stochastic algorithms," in Control of fluid flow, Springer Berlin Heidelberg, 2006, pp. 213-229.
    [BibTeX] [PDF] [DOI]
    @incollection{koumoutsakos2006a,
    author = {Petros Koumoutsakos and Sibylle D. M{\"u}ller},
    booktitle = {Control of Fluid Flow},
    doi = {10.1007/978-3-540-36085-8_10},
    pages = {213--229},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Flow Optimization Using Stochastic Algorithms},
    url = {https://doi.org/10.1007%2F978-3-540-36085-8_10},
    year = {2006}
    }

  • I. F. Sbalzarini, A. Hayer, A. Helenius, and P. Koumoutsakos, “Simulations of (an)isotropic diffusion on curved biological surfaces," Biophysical journal, vol. 90, iss. 3, pp. 878-885, 2006.
    [BibTeX] [PDF] [DOI]
    @article{sbalzarini2006a,
    author = {Ivo F. Sbalzarini and Arnold Hayer and Ari Helenius and Petros Koumoutsakos},
    doi = {10.1529/biophysj.105.073809},
    journal = {Biophysical Journal},
    month = {feb},
    number = {3},
    pages = {878--885},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Simulations of (An)Isotropic Diffusion on Curved Biological Surfaces},
    url = {https://doi.org/10.1529%2Fbiophysj.105.073809},
    volume = {90},
    year = {2006}
    }

  • I. F. Sbalzarini, J. H. Walther, B. Polasek, P. Chatelain, M. Bergdorf, S. E. Hieber, E. M. Kotsalis, and P. Koumoutsakos, “A software framework for the portable parallelization of particle-mesh simulations," in Euro-par 2006 parallel processing, Springer Berlin Heidelberg, 2006, pp. 730-739.
    [BibTeX] [PDF] [DOI]
    @incollection{sbalzarini2006b,
    author = {I. F. Sbalzarini and J. H. Walther and B. Polasek and P. Chatelain and M. Bergdorf and S. E. Hieber and E. M. Kotsalis and P. Koumoutsakos},
    booktitle = {Euro-Par 2006 Parallel Processing},
    doi = {10.1007/11823285_76},
    pages = {730--739},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {A Software Framework for the Portable Parallelization of Particle-Mesh Simulations},
    url = {https://doi.org/10.1007%2F11823285_76},
    year = {2006}
    }

  • I. F. Sbalzarini, J. H. Walther, M. Bergdorf, S. E. Hieber, E. M. Kotsalis, and P. Koumoutsakos, “PPM — a highly efficient parallel particle—mesh library for the simulation of continuum systems," Journal of computational physics, vol. 215, iss. 2, pp. 566-588, 2006.
    [BibTeX] [PDF] [DOI]
    @article{sbalzarini2006c,
    author = {I.F. Sbalzarini and J.H. Walther and M. Bergdorf and S.E. Hieber and E.M. Kotsalis and P. Koumoutsakos},
    doi = {10.1016/j.jcp.2005.11.017},
    journal = {Journal of Computational Physics},
    month = {jul},
    number = {2},
    pages = {566--588},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{PPM} {\textendash} A highly efficient parallel particle{\textendash}mesh library for the simulation of continuum systems},
    url = {https://doi.org/10.1016%2Fj.jcp.2005.11.017},
    volume = {215},
    year = {2006}
    }

  • P. A. E. Schoen, J. H. Walther, S. Arcidiacono, D. Poulikakos, and P. Koumoutsakos, “Nanoparticle traffic on helical tracks: thermophoretic mass transport through carbon nanotubes," Nano letters, vol. 6, iss. 9, pp. 1910-1917, 2006.
    [BibTeX] [PDF] [DOI]
    @article{schoen2006a,
    author = {Philipp A. E. Schoen and Jens H. Walther and Salvatore Arcidiacono and Dimos Poulikakos and Petros Koumoutsakos},
    doi = {10.1021/nl060982r},
    journal = {Nano Letters},
    month = {sep},
    number = {9},
    pages = {1910--1917},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Nanoparticle Traffic on Helical Tracks: Thermophoretic Mass Transport through Carbon Nanotubes},
    url = {https://doi.org/10.1021%2Fnl060982r},
    volume = {6},
    year = {2006}
    }

2005

  • S. Arcidiacono, J. H. Walther, D. Poulikakos, D. Passerone, and P. Koumoutsakos, “Solidification of gold nanoparticles in carbon nanotubes," Physical review letters, vol. 94, iss. 10, 2005.
    [BibTeX] [PDF] [DOI]
    @article{arcidiacono2005a,
    author = {S. Arcidiacono and J. H. Walther and D. Poulikakos and D. Passerone and P. Koumoutsakos},
    doi = {10.1103/physrevlett.94.105502},
    journal = {Physical Review Letters},
    month = {mar},
    number = {10},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Solidification of Gold Nanoparticles in Carbon Nanotubes},
    url = {https://doi.org/10.1103%2Fphysrevlett.94.105502},
    volume = {94},
    year = {2005}
    }

  • M. Bergdorf, G. Cottet, and P. Koumoutsakos, “Multilevel adaptive particle methods for convection-diffusion equations," Multiscale modeling & simulation, vol. 4, iss. 1, pp. 328-357, 2005.
    [BibTeX] [PDF] [DOI]
    @article{bergdorf2005a,
    author = {Michael Bergdorf and Georges-Henri Cottet and Petros Koumoutsakos},
    doi = {10.1137/040602882},
    journal = {Multiscale Modeling {\&} Simulation},
    month = {jan},
    number = {1},
    pages = {328--357},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {Multilevel Adaptive Particle Methods for Convection-Diffusion Equations},
    url = {https://doi.org/10.1137%2F040602882},
    volume = {4},
    year = {2005}
    }

  • D. Buche, N. N. Schraudolph, and P. Koumoutsakos, “Accelerating evolutionary algorithms with gaussian process fitness function models," IEEE transactions on systems, man and cybernetics, part c (applications and reviews), vol. 35, iss. 2, pp. 183-194, 2005.
    [BibTeX] [PDF] [DOI]
    @article{buche2005a,
    author = {D. Buche and N.N. Schraudolph and P. Koumoutsakos},
    doi = {10.1109/tsmcc.2004.841917},
    journal = {{IEEE} Transactions on Systems, Man and Cybernetics, Part C (Applications and Reviews)},
    month = {may},
    number = {2},
    pages = {183--194},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {Accelerating Evolutionary Algorithms With Gaussian Process Fitness Function Models},
    url = {https://doi.org/10.1109%2Ftsmcc.2004.841917},
    volume = {35},
    year = {2005}
    }

  • H. Ewers, A. E. Smith, I. F. Sbalzarini, H. Lilie, P. Koumoutsakos, and A. Helenius, “Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes," Proceedings of the national academy of sciences, vol. 102, iss. 42, pp. 15110-15115, 2005.
    [BibTeX] [PDF] [DOI]
    @article{ewers2005a,
    author = {H. Ewers and A. E. Smith and I. F. Sbalzarini and H. Lilie and P. Koumoutsakos and A. Helenius},
    doi = {10.1073/pnas.0504407102},
    journal = {Proceedings of the National Academy of Sciences},
    month = {oct},
    number = {42},
    pages = {15110--15115},
    publisher = {Proceedings of the National Academy of Sciences},
    section = {Journals},
    title = {Single-particle tracking of murine polyoma virus-like particles on live cells and artificial membranes},
    url = {https://doi.org/10.1073%2Fpnas.0504407102},
    volume = {102},
    year = {2005}
    }

  • S. E. Hieber and P. Koumoutsakos, “A lagrangian particle level set method," Journal of computational physics, vol. 210, iss. 1, pp. 342-367, 2005.
    [BibTeX] [PDF] [DOI]
    @article{hieber2005a,
    author = {Simone E. Hieber and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2005.04.013},
    journal = {Journal of Computational Physics},
    month = {nov},
    number = {1},
    pages = {342--367},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A Lagrangian particle level set method},
    url = {https://doi.org/10.1016%2Fj.jcp.2005.04.013},
    volume = {210},
    year = {2005}
    }

  • T. Hou and P. Koumoutsakos, “Special section on multiscale modeling in materials and life sciences," Multiscale modeling & simulation, vol. 4, iss. 1, pp. 213-214, 2005.
    [BibTeX] [PDF] [DOI]
    @article{hou2005a,
    author = {Thomas Hou and Petros Koumoutsakos},
    doi = {10.1137/mmsubt000004000001000213000001},
    journal = {Multiscale Modeling {\&} Simulation},
    month = {jan},
    number = {1},
    pages = {213--214},
    publisher = {Society for Industrial {\&} Applied Mathematics ({SIAM})},
    section = {Journals},
    title = {Special Section on Multiscale Modeling in Materials and Life Sciences},
    url = {https://doi.org/10.1137%2Fmmsubt000004000001000213000001},
    volume = {4},
    year = {2005}
    }

  • E. M. Kotsalis, E. Demosthenous, J. H. Walther, S. C. Kassinos, and P. Koumoutsakos, “Wetting of doped carbon nanotubes by water droplets," Chemical physics letters, vol. 412, iss. 4-6, pp. 250-254, 2005.
    [BibTeX] [PDF] [DOI]
    @article{kotsalis2005a,
    author = {E.M. Kotsalis and E. Demosthenous and J.H. Walther and S.C. Kassinos and P. Koumoutsakos},
    doi = {10.1016/j.cplett.2005.06.122},
    journal = {Chemical Physics Letters},
    month = {sep},
    number = {4-6},
    pages = {250--254},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Wetting of doped carbon nanotubes by water droplets},
    url = {https://doi.org/10.1016%2Fj.cplett.2005.06.122},
    volume = {412},
    year = {2005}
    }

  • P. Koumoutsakos, “Multicscale flow simulations using particles," Annual review of fluid mechanics, vol. 37, iss. 1, pp. 457-487, 2005.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2005a,
    author = {Petros Koumoutsakos},
    doi = {10.1146/annurev.fluid.37.061903.175753},
    journal = {Annual Review of Fluid Mechanics},
    month = {jan},
    number = {1},
    pages = {457--487},
    publisher = {Annual Reviews},
    section = {Journals},
    title = {Multicscale Flow Simulations using Particles},
    url = {https://doi.org/10.1146%2Fannurev.fluid.37.061903.175753},
    volume = {37},
    year = {2005}
    }

  • P. Poncet and P. Koumoutsakos, “Optimization of vortex shedding in 3-D wakes using belt actuators," International journal of offshore and polar engineering, vol. 15, iss. 1, pp. 7-13, 2005.
    [BibTeX] [PDF]
    @article{poncet2005a,
    author = {Poncet, P. and Koumoutsakos, P.},
    journal = {International Journal of Offshore and Polar Engineering},
    number = {1},
    pages = {7--13},
    section = {Journals},
    title = {Optimization of Vortex Shedding In {3-D} Wakes Using Belt Actuators},
    volume = {15},
    year = {2005}
    }

  • P. Poncet, G. Cottet, and P. Koumoutsakos, “Control of three-dimensional wakes using evolution strategies," Comptes rendus mécanique, vol. 333, iss. 1, pp. 65-77, 2005.
    [BibTeX] [PDF] [DOI]
    @article{poncet2005b,
    author = {Philippe Poncet and Georges-Henri Cottet and Petros Koumoutsakos},
    doi = {10.1016/j.crme.2004.10.007},
    journal = {Comptes Rendus M{\'{e}}canique},
    month = {jan},
    number = {1},
    pages = {65--77},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Control of three-dimensional wakes using evolution strategies},
    url = {https://doi.org/10.1016%2Fj.crme.2004.10.007},
    volume = {333},
    year = {2005}
    }

  • I. F. Sbalzarini, A. Mezzacasa, A. Helenius, and P. Koumoutsakos, “Effects of organelle shape on fluorescence recovery after photobleaching," Biophysical journal, vol. 89, iss. 3, pp. 1482-1492, 2005.
    [BibTeX] [PDF] [DOI]
    @article{sbalzarini2005a,
    author = {Ivo F. Sbalzarini and Anna Mezzacasa and Ari Helenius and Petros Koumoutsakos},
    doi = {10.1529/biophysj.104.057885},
    journal = {Biophysical Journal},
    month = {sep},
    number = {3},
    pages = {1482--1492},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Effects of Organelle Shape on Fluorescence Recovery after Photobleaching},
    url = {https://doi.org/10.1529%2Fbiophysj.104.057885},
    volume = {89},
    year = {2005}
    }

  • I. F. Sbalzarini and P. Koumoutsakos, “Feature point tracking and trajectory analysis for video imaging in cell biology," Journal of structural biology, vol. 151, iss. 2, pp. 182-195, 2005.
    [BibTeX] [PDF] [DOI]
    @article{sbalzarini2005b,
    author = {I.F. Sbalzarini and P. Koumoutsakos},
    doi = {10.1016/j.jsb.2005.06.002},
    journal = {Journal of Structural Biology},
    month = {aug},
    number = {2},
    pages = {182--195},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Feature point tracking and trajectory analysis for video imaging in cell biology},
    url = {https://doi.org/10.1016%2Fj.jsb.2005.06.002},
    volume = {151},
    year = {2005}
    }

  • T. Werder, J. H. Walther, and P. Koumoutsakos, “Hybrid atomistic—continuum method for the simulation of dense fluid flows," Journal of computational physics, vol. 205, iss. 1, pp. 373-390, 2005.
    [BibTeX] [PDF] [DOI]
    @article{werder2005a,
    author = {Thomas Werder and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1016/j.jcp.2004.11.019},
    journal = {Journal of Computational Physics},
    month = {may},
    number = {1},
    pages = {373--390},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Hybrid atomistic{\textendash}continuum method for the simulation of dense fluid flows},
    url = {https://doi.org/10.1016%2Fj.jcp.2004.11.019},
    volume = {205},
    year = {2005}
    }

  • U. Zimmerli, P. G. Gonnet, J. H. Walther, and P. Koumoutsakos, “Curvature Induced L-defects in water conduction in carbon nanotubes," Nano letters, vol. 5, iss. 6, pp. 1017-1022, 2005.
    [BibTeX] [PDF] [DOI]
    @article{zimmerli2005a,
    author = {Urs Zimmerli and Pedro G. Gonnet and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1021/nl0503126},
    journal = {Nano Letters},
    month = {jun},
    number = {6},
    pages = {1017--1022},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Curvature {Induced} {L}-Defects in Water Conduction in Carbon Nanotubes},
    url = {https://doi.org/10.1021%2Fnl0503126},
    volume = {5},
    year = {2005}
    }

2004

  • S. E. Hieber, J. H. Walther, and P. Koumoutsakos, “Remeshed smoothed particle hydrodynamics simulation of the mechanical behavior of human organs," Technology and health care, vol. 12, iss. 4, pp. 305-314, 2004.
    [BibTeX] [PDF]
    @article{hieber2004a,
    author = {Hieber, S. E. and Walther, J. H. and Koumoutsakos, P.},
    journal = {Technology and Health Care},
    number = {4},
    pages = {305--314},
    section = {Journals},
    title = {Remeshed smoothed particle hydrodynamics simulation of the mechanical behavior of human organs},
    volume = {12},
    year = {2004}
    }

  • R. L. Jaffe, P. Gonnet, T. Werder, J. H. Walther, and P. Koumoutsakos, “Water—carbon interactions 2: calibration of potentials using contact angle data for different interaction models," Molecular simulation, vol. 30, iss. 4, pp. 205-216, 2004.
    [BibTeX] [PDF] [DOI]
    @article{jaffe2004a,
    author = {Richard L. Jaffe and Pedro Gonnet and Thomas Werder and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1080/08927020310001659124},
    journal = {Molecular Simulation},
    month = {apr},
    number = {4},
    pages = {205--216},
    publisher = {Informa {UK} Limited},
    section = {Journals},
    title = {Water{\textendash}Carbon Interactions 2: Calibration of Potentials using Contact Angle Data for Different Interaction Models},
    url = {https://doi.org/10.1080%2F08927020310001659124},
    volume = {30},
    year = {2004}
    }

  • S. Kern, S. D. Müller, N. Hansen, D. Büche, J. Ocenasek, and P. Koumoutsakos, “Learning probability distributions in continuous evolutionary algorithms — a comparative review," Natural computing, vol. 3, iss. 1, pp. 77-112, 2004.
    [BibTeX] [PDF] [DOI]
    @article{kern2004a,
    author = {Stefan Kern and Sibylle D. M{\"u}ller and Nikolaus Hansen and Dirk B{\"u}che and Jiri Ocenasek and Petros Koumoutsakos},
    doi = {10.1023/b:naco.0000023416.59689.4e},
    journal = {Natural Computing},
    number = {1},
    pages = {77--112},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Learning probability distributions in continuous evolutionary algorithms {\textendash} a comparative review},
    url = {https://doi.org/10.1023%2Fb%3Anaco.0000023416.59689.4e},
    volume = {3},
    year = {2004}
    }

  • E. M. Kotsalis, J. H. Walther, and P. Koumoutsakos, “Multiphase water flow inside carbon nanotubes," International journal of multiphase flow, vol. 30, iss. 7-8, pp. 995-1010, 2004.
    [BibTeX] [PDF] [DOI]
    @article{kotsalis2004a,
    author = {E.M. Kotsalis and J.H. Walther and P. Koumoutsakos},
    doi = {10.1016/j.ijmultiphaseflow.2004.03.009},
    journal = {International Journal of Multiphase Flow},
    month = {jul},
    number = {7-8},
    pages = {995--1010},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Multiphase water flow inside carbon nanotubes},
    url = {https://doi.org/10.1016%2Fj.ijmultiphaseflow.2004.03.009},
    volume = {30},
    year = {2004}
    }

  • M. Milano, P. Koumoutsakos, and J. Schmidhuber, “Self-organizing nets for optimization," IEEE transactions on neural networks, vol. 15, iss. 3, pp. 758-765, 2004.
    [BibTeX] [PDF] [DOI]
    @article{milano2004a,
    author = {M. Milano and P. Koumoutsakos and J. Schmidhuber},
    doi = {10.1109/tnn.2004.826132},
    journal = {{IEEE} Transactions on Neural Networks},
    month = {may},
    number = {3},
    pages = {758--765},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {Self-Organizing Nets for Optimization},
    url = {https://doi.org/10.1109%2Ftnn.2004.826132},
    volume = {15},
    year = {2004}
    }

  • S. D. Müller, I. Mezić, J. H. Walther, and P. Koumoutsakos, “Transverse momentum micromixer optimization with evolution strategies," Computers & fluids, vol. 33, iss. 4, pp. 521-531, 2004.
    [BibTeX] [PDF] [DOI]
    @article{muller2004a,
    author = {Sibylle D. M{\"u}ller and Igor Mezi{\'{c}} and Jens H. Walther and Petros Koumoutsakos},
    doi = {10.1016/j.compfluid.2003.07.004},
    journal = {Computers {\&} Fluids},
    month = {may},
    number = {4},
    pages = {521--531},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Transverse momentum micromixer optimization with evolution strategies},
    url = {https://doi.org/10.1016%2Fj.compfluid.2003.07.004},
    volume = {33},
    year = {2004}
    }

  • J. H. Walther, T. Werder, R. L. Jaffe, P. Gonnet, M. Bergdorf, U. Zimmerli, and P. Koumoutsakos, “Water—carbon interactions III: the influence of surface and fluid impurities," Phys. chem. chem. phys., vol. 6, iss. 8, pp. 1988-1995, 2004.
    [BibTeX] [PDF] [DOI]
    @article{walther2004a,
    author = {J. H. Walther and T. Werder and R. L. Jaffe and P. Gonnet and M. Bergdorf and U. Zimmerli and P. Koumoutsakos},
    doi = {10.1039/b312740k},
    journal = {Phys. Chem. Chem. Phys.},
    number = {8},
    pages = {1988--1995},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Water{\textendash}carbon interactions {III}: The influence of surface and fluid impurities},
    url = {https://doi.org/10.1039%2Fb312740k},
    volume = {6},
    year = {2004}
    }

  • J. H. Walther, T. Werder, R. L. Jaffe, and P. Koumoutsakos, “Hydrodynamic properties of carbon nanotubes," Physical review e, vol. 69, iss. 6, 2004.
    [BibTeX] [PDF] [DOI]
    @article{walther2004b,
    author = {J. H. Walther and T. Werder and R. L. Jaffe and P. Koumoutsakos},
    doi = {10.1103/physreve.69.062201},
    journal = {Physical Review E},
    month = {jun},
    number = {6},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Hydrodynamic properties of carbon nanotubes},
    url = {https://doi.org/10.1103%2Fphysreve.69.062201},
    volume = {69},
    year = {2004}
    }

  • J. H. Walther, R. L. Jaffe, E. M. Kotsalis, T. Werder, T. Halicioglu, and P. Koumoutsakos, “Hydrophobic hydration of c60 and carbon nanotubes in water," Carbon, vol. 42, iss. 5-6, pp. 1185-1194, 2004.
    [BibTeX] [PDF] [DOI]
    @article{walther2004c,
    author = {J.H. Walther and R.L. Jaffe and E.M. Kotsalis and T. Werder and T. Halicioglu and P. Koumoutsakos},
    doi = {10.1016/j.carbon.2003.12.071},
    journal = {Carbon},
    month = {jan},
    number = {5-6},
    pages = {1185--1194},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Hydrophobic hydration of C60 and carbon nanotubes in water},
    url = {https://doi.org/10.1016%2Fj.carbon.2003.12.071},
    volume = {42},
    year = {2004}
    }

  • U. Zimmerli, M. Parrinello, and P. Koumoutsakos, “Dispersion corrections to density functionals for water aromatic interactions," The journal of chemical physics, vol. 120, iss. 6, pp. 2693-2699, 2004.
    [BibTeX] [PDF] [DOI]
    @article{zimmerli2004a,
    author = {Urs Zimmerli and Michele Parrinello and Petros Koumoutsakos},
    doi = {10.1063/1.1637034},
    journal = {The Journal of Chemical Physics},
    month = {feb},
    number = {6},
    pages = {2693--2699},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Dispersion corrections to density functionals for water aromatic interactions},
    url = {https://doi.org/10.1063%2F1.1637034},
    volume = {120},
    year = {2004}
    }

2003

  • N. Hansen, S. D. Müller, and P. Koumoutsakos, “Reducing the time complexity of the derandomized evolution strategy with covariance matrix adaptation (CMA-ES)," Evolutionary computation, vol. 11, iss. 1, pp. 1-18, 2003.
    [BibTeX] [PDF] [DOI]
    @article{hansen2003a,
    author = {Nikolaus Hansen and Sibylle D. M{\"u}ller and Petros Koumoutsakos},
    doi = {10.1162/106365603321828970},
    journal = {Evolutionary Computation},
    month = {mar},
    number = {1},
    pages = {1--18},
    publisher = {{MIT} Press - Journals},
    section = {Journals},
    title = {Reducing the Time Complexity of the Derandomized Evolution Strategy with Covariance Matrix Adaptation ({CMA}-{ES})},
    url = {https://doi.org/10.1162%2F106365603321828970},
    volume = {11},
    year = {2003}
    }

  • T. Werder, J. H. Walther, R. L. Jaffe, T. Halicioglu, and P. Koumoutsakos, “On the water-carbon interaction for use in molecular dynamics simulations of graphite and carbon nanotubes," The journal of physical chemistry b, vol. 112, iss. 44, pp. 14090-14090, 2003.
    [BibTeX] [PDF] [DOI]
    @article{werder2003a,
    author = {T. Werder and J. H. Walther and R. L. Jaffe and T. Halicioglu and P. Koumoutsakos},
    doi = {10.1021/jp8083106},
    journal = {The Journal of Physical Chemistry B},
    month = {nov},
    number = {44},
    pages = {14090--14090},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {On the Water-Carbon Interaction for Use in Molecular Dynamics Simulations of Graphite and Carbon Nanotubes},
    url = {https://doi.org/10.1021%2Fjp8083106},
    volume = {112},
    year = {2003}
    }

2002

  • D. Buche, P. Stoll, R. Dornberger, and P. Koumoutsakos, “Multi—objective evolutionary algorithm for the optimization of noisy combustion processes," IEEE transactions on systems, man and cybernetics, part c (applications and reviews), vol. 32, iss. 4, pp. 460-473, 2002.
    [BibTeX] [PDF] [DOI]
    @article{buche2002a,
    author = {D. Buche and P. Stoll and R. Dornberger and P. Koumoutsakos},
    doi = {10.1109/tsmcb.2002.804372},
    journal = {{IEEE} Transactions on Systems, Man and Cybernetics, Part C (Applications and Reviews)},
    month = {nov},
    number = {4},
    pages = {460--473},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {Multi{\textendash}objective evolutionary algorithm for the optimization of noisy combustion processes},
    url = {https://doi.org/10.1109%2Ftsmcb.2002.804372},
    volume = {32},
    year = {2002}
    }

  • A. K. Chaniotis, D. Poulikakos, and P. Koumoutsakos, “Remeshed smoothed particle hydrodynamics for the simulation of viscous and heat conducting flows," Journal of computational physics, vol. 182, iss. 1, pp. 67-90, 2002.
    [BibTeX] [PDF] [DOI]
    @article{chaniotis2002a,
    author = {A.K. Chaniotis and D. Poulikakos and P. Koumoutsakos},
    doi = {10.1006/jcph.2002.7152},
    journal = {Journal of Computational Physics},
    month = {oct},
    number = {1},
    pages = {67--90},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Remeshed Smoothed Particle Hydrodynamics for the Simulation of Viscous and Heat Conducting Flows},
    url = {https://doi.org/10.1006%2Fjcph.2002.7152},
    volume = {182},
    year = {2002}
    }

  • R. Gämperle, S. D. Mueller, and P. Koumoutsakos, “A parameter study for differential evolution," in Proceedings of the international conference on advances in intelligent systems, fuzzy systems, evolutionary computation (WSEAS), 2002.
    [BibTeX] [PDF]
    @inproceedings{gamperle2002a,
    author = {G{\"a}mperle, R. and Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {Proceedings of the International Conference on Advances in Intelligent Systems, Fuzzy Systems, Evolutionary Computation {(WSEAS)}},
    section = {Journals},
    title = {A parameter study for differential evolution},
    year = {2002}
    }

  • M. Milano and P. Koumoutsakos, “A clustering genetic algorithm for cylinder drag optimization," Journal of computational physics, vol. 175, iss. 1, pp. 79-107, 2002.
    [BibTeX] [PDF] [DOI]
    @article{milano2002a,
    author = {Michele Milano and Petros Koumoutsakos},
    doi = {10.1006/jcph.2001.6882},
    journal = {Journal of Computational Physics},
    month = {jan},
    number = {1},
    pages = {79--107},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A Clustering Genetic Algorithm for Cylinder Drag Optimization},
    url = {https://doi.org/10.1006%2Fjcph.2001.6882},
    volume = {175},
    year = {2002}
    }

  • M. Milano and P. Koumoutsakos, “Neural network modeling for near wall turbulent flow," Journal of computational physics, vol. 182, iss. 1, pp. 1-26, 2002.
    [BibTeX] [PDF] [DOI]
    @article{milano2002b,
    author = {Michele Milano and Petros Koumoutsakos},
    doi = {10.1006/jcph.2002.7146},
    journal = {Journal of Computational Physics},
    month = {oct},
    number = {1},
    pages = {1--26},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Neural Network Modeling for Near Wall Turbulent Flow},
    url = {https://doi.org/10.1006%2Fjcph.2002.7146},
    volume = {182},
    year = {2002}
    }

  • S. D. Muller, J. Marchetto, S. Airaghi, and P. Kournoutsakos, “Optimization based on bacterial chemotaxis," IEEE transactions on evolutionary computation, vol. 6, iss. 1, pp. 16-29, 2002.
    [BibTeX] [PDF] [DOI]
    @article{muller2002a,
    author = {S.D. Muller and J. Marchetto and S. Airaghi and P. Kournoutsakos},
    doi = {10.1109/4235.985689},
    journal = {{IEEE} Transactions on Evolutionary Computation},
    number = {1},
    pages = {16--29},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {Optimization based on bacterial chemotaxis},
    url = {https://doi.org/10.1109%2F4235.985689},
    volume = {6},
    year = {2002}
    }

2001

  • P. Koumoutsakos, J. Freund, and D. Parekh, “Evolution strategies for automatic optimization of jet mixing," AIAA journal, vol. 39, pp. 967-969, 2001.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos2001a,
    author = {Petros Koumoutsakos and Jonathan Freund and David Parekh},
    doi = {10.2514/3.14826},
    journal = {{AIAA} Journal},
    month = {jan},
    pages = {967--969},
    publisher = {American Institute of Aeronautics and Astronautics ({AIAA})},
    section = {Journals},
    title = {Evolution strategies for automatic optimization of jet mixing},
    url = {https://doi.org/10.2514%2F3.14826},
    volume = {39},
    year = {2001}
    }

  • S. D. Mueller, J. H. Walther, and P. D. Koumoutsakos, “Evolution strategies for film cooling optimization," AIAA journal, vol. 39, pp. 537-539, 2001.
    [BibTeX] [PDF] [DOI]
    @article{mueller2001a,
    author = {Sibylle D. Mueller and Jens H. Walther and Petros D. Koumoutsakos},
    doi = {10.2514/3.14766},
    journal = {{AIAA} Journal},
    month = {jan},
    pages = {537--539},
    publisher = {American Institute of Aeronautics and Astronautics ({AIAA})},
    section = {Journals},
    title = {Evolution strategies for film cooling optimization},
    url = {https://doi.org/10.2514%2F3.14766},
    volume = {39},
    year = {2001}
    }

  • J. H. Walther and P. Koumoutsakos, “Molecular dynamics simulation of nanodroplet evaporation," Journal of heat transfer, vol. 123, iss. 4, p. 741, 2001.
    [BibTeX] [PDF] [DOI]
    @article{walther2001a,
    author = {J. H. Walther and P. Koumoutsakos},
    doi = {10.1115/1.1370517},
    journal = {Journal of Heat Transfer},
    number = {4},
    pages = {741},
    publisher = {{ASME} International},
    section = {Journals},
    title = {Molecular Dynamics Simulation of Nanodroplet Evaporation},
    url = {https://doi.org/10.1115%2F1.1370517},
    volume = {123},
    year = {2001}
    }

  • J. H. Walther, R. Jaffe, T. Halicioglu, and P. Koumoutsakos, “Carbon nanotubes in water: structural characteristics and energetics," The journal of physical chemistry b, vol. 105, iss. 41, pp. 9980-9987, 2001.
    [BibTeX] [PDF] [DOI]
    @article{walther2001b,
    author = {J. H. Walther and R. Jaffe and T. Halicioglu and P. Koumoutsakos},
    doi = {10.1021/jp011344u},
    journal = {The Journal of Physical Chemistry B},
    month = {oct},
    number = {41},
    pages = {9980--9987},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Carbon Nanotubes in Water: Structural Characteristics and Energetics},
    url = {https://doi.org/10.1021%2Fjp011344u},
    volume = {105},
    year = {2001}
    }

  • J. H. Walther and P. Koumoutsakos, “Three-dimensional vortex methods for particle-laden flows with two-way coupling," Journal of computational physics, vol. 167, iss. 1, pp. 39-71, 2001.
    [BibTeX] [PDF] [DOI]
    @article{walther2001c,
    author = {J.H. Walther and P. Koumoutsakos},
    doi = {10.1006/jcph.2000.6656},
    journal = {Journal of Computational Physics},
    month = {feb},
    number = {1},
    pages = {39--71},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Three-Dimensional Vortex Methods for Particle-Laden Flows with Two-Way Coupling},
    url = {https://doi.org/10.1006%2Fjcph.2000.6656},
    volume = {167},
    year = {2001}
    }

  • T. Werder, J. H. Walther, R. L. Jaffe, T. Halicioglu, F. Noca, and P. Koumoutsakos, “Molecular dynamics simulation of contact angles of water droplets in carbon nanotubes," Nano letters, vol. 1, iss. 12, pp. 697-702, 2001.
    [BibTeX] [PDF] [DOI]
    @article{werder2001b,
    author = {Thomas Werder and Jens H. Walther and Richard L. Jaffe and Timur Halicioglu and Flavio Noca and Petros Koumoutsakos},
    doi = {10.1021/nl015640u},
    journal = {Nano Letters},
    month = {dec},
    number = {12},
    pages = {697--702},
    publisher = {American Chemical Society ({ACS})},
    section = {Journals},
    title = {Molecular Dynamics Simulation of Contact Angles of Water Droplets in Carbon Nanotubes},
    url = {https://doi.org/10.1021%2Fnl015640u},
    volume = {1},
    year = {2001}
    }

  • S. Zimmermann, P. Koumoutsakos, and W. Kinzelbach, “Simulation of pollutant transport using a particle method," Journal of computational physics, vol. 173, iss. 1, pp. 322-347, 2001.
    [BibTeX] [PDF] [DOI]
    @article{zimmermann2001a,
    author = {S. Zimmermann and P. Koumoutsakos and W. Kinzelbach},
    doi = {10.1006/jcph.2001.6879},
    journal = {Journal of Computational Physics},
    month = {oct},
    number = {1},
    pages = {322--347},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Simulation of Pollutant Transport Using a Particle Method},
    url = {https://doi.org/10.1006%2Fjcph.2001.6879},
    volume = {173},
    year = {2001}
    }

2000

  • G. Cottet, P. Koumoutsakos, and M. L. O. Salihi, “Vortex methods with spatially varying cores," Journal of computational physics, vol. 162, iss. 1, pp. 164-185, 2000.
    [BibTeX] [PDF] [DOI]
    @article{cottet2000a,
    author = {Georges-Henri Cottet and Petros Koumoutsakos and Mohamed Lemine Ould Salihi},
    doi = {10.1006/jcph.2000.6531},
    journal = {Journal of Computational Physics},
    month = {jul},
    number = {1},
    pages = {164--185},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Vortex Methods with Spatially Varying Cores},
    url = {https://doi.org/10.1006%2Fjcph.2000.6531},
    volume = {162},
    year = {2000}
    }

  • F. Noca, M. Hoenk, B. Hunt, P. Koumoutsakos, J. Walther, and T. Werder, “Bio-inspired acoustic sensors based on artificial stereocilia," The journal of the acoustical society of america, vol. 108, iss. 5, pp. 2494-2494, 2000.
    [BibTeX] [DOI]
    @article{noca2000a,
    author = {Flavio Noca and Michael Hoenk and Brian Hunt and Petros Koumoutsakos and Jens Walther and Thomas Werder},
    doi = {10.1121/1.4743209},
    journal = {The Journal of the Acoustical Society of America},
    month = {nov},
    number = {5},
    pages = {2494--2494},
    publisher = {Acoustical Society of America ({ASA})},
    section = {Journals},
    title = {Bio-inspired acoustic sensors based on artificial stereocilia},
    url = {https://doi.org/10.1121%2F1.4743209},
    volume = {108},
    year = {2000}
    }

  • J. H. Walther, S. -S. Lee, and P. Koumoutsakos, “Simulation of particle laden flows using particle methods," Physics of fluids, vol. 12, iss. 9, p. S13–S13, 2000.
    [BibTeX] [PDF] [DOI]
    @article{walther2000a,
    author = {J. H. Walther and S.-S. Lee and P. Koumoutsakos},
    doi = {10.1063/1.4739174},
    journal = {Physics of Fluids},
    month = {sep},
    number = {9},
    pages = {S13--S13},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Simulation of Particle Laden Flows Using Particle Methods},
    url = {https://doi.org/10.1063%2F1.4739174},
    volume = {12},
    year = {2000}
    }

1999

  • P. Koumoutsakos, “Vorticity flux control for a turbulent channel flow," Physics of fluids, vol. 11, iss. 2, pp. 248-250, 1999.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1999a,
    author = {Petros Koumoutsakos},
    doi = {10.1063/1.869874},
    journal = {Physics of Fluids},
    month = {feb},
    number = {2},
    pages = {248--250},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Vorticity flux control for a turbulent channel flow},
    url = {https://doi.org/10.1063%2F1.869874},
    volume = {11},
    year = {1999}
    }

  • T. Lundgren and P. Koumoutsakos, “On the generation of vorticity at a free surface," Journal of fluid mechanics, vol. 382, pp. 351-366, 1999.
    [BibTeX] [PDF] [DOI]
    @article{lundgren1999a,
    author = {Thomas Lundgren and Petros Koumoutsakos},
    doi = {10.1017/s0022112098003978},
    journal = {Journal of Fluid Mechanics},
    month = {mar},
    pages = {351--366},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {On the generation of vorticity at a free surface},
    url = {https://doi.org/10.1017%2Fs0022112098003978},
    volume = {382},
    year = {1999}
    }

  • J. H. Walther and P. Koumoutsakos, “Particle methods for incompressible flow simulations," Speedup journal, vol. 12, iss. 2, pp. 27-32, 1999.
    [BibTeX] [PDF]
    @article{walther1999a,
    author = {Walther, J. H. and Koumoutsakos, P.},
    journal = {Speedup Journal},
    number = {2},
    pages = {27--32},
    section = {Journals},
    title = {Particle methods for incompressible flow simulations},
    volume = {12},
    year = {1999}
    }

  • J. H. Walther, Y. Pan, D. Poulikakos, and P. Koumoutsakos, “Molecular dynamics simulations of evaporation and coalescence of nano size droplet," Journal of heat transfer, vol. 121, iss. 2, 1999.
    [BibTeX]
    @article{walther1999b,
    author = {Walther, J. H. and Pan, Y. and Poulikakos, D. and Koumoutsakos, P.},
    journal = {Journal of Heat Transfer},
    note = {Gallery Award},
    number = {2},
    section = {Journals},
    title = {Molecular dynamics simulations of evaporation and coalescence of nano size droplet},
    volume = {121},
    year = {1999}
    }

1997

  • P. Koumoutsakos, “Inviscid axisymmetrization of an elliptical vortex," Journal of computational physics, vol. 138, iss. 2, pp. 821-857, 1997.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1997a,
    author = {P. Koumoutsakos},
    doi = {10.1006/jcph.1997.5749},
    journal = {Journal of Computational Physics},
    month = {dec},
    number = {2},
    pages = {821--857},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Inviscid Axisymmetrization of an Elliptical Vortex},
    url = {https://doi.org/10.1006%2Fjcph.1997.5749},
    volume = {138},
    year = {1997}
    }

  • P. Koumoutsakos, “Active control of vortex—wall interactions," Physics of fluids, vol. 9, iss. 12, pp. 3808-3816, 1997.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1997b,
    author = {Petros Koumoutsakos},
    doi = {10.1063/1.869515},
    journal = {Physics of Fluids},
    month = {dec},
    number = {12},
    pages = {3808--3816},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Active control of vortex{\textendash}wall interactions},
    url = {https://doi.org/10.1063%2F1.869515},
    volume = {9},
    year = {1997}
    }

1996

  • P. Koumoutsakos and D. Shiels, “Simulations of the viscous flow normal to an impulsively started and uniformly accelerated flat plate," Journal of fluid mechanics, vol. 328, iss. -1, p. 177, 1996.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1996a,
    author = {P. Koumoutsakos and D. Shiels},
    doi = {10.1017/s0022112096008695},
    journal = {Journal of Fluid Mechanics},
    month = {dec},
    number = {-1},
    pages = {177},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Simulations of the viscous flow normal to an impulsively started and uniformly accelerated flat plate},
    url = {https://doi.org/10.1017%2Fs0022112096008695},
    volume = {328},
    year = {1996}
    }

1995

  • P. Koumoutsakos and A. Leonard, “High-resolution simulations of the flow around an impulsively started cylinder using vortex methods," Journal of fluid mechanics, vol. 296, iss. -1, p. 1, 1995.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1995a,
    author = {P. Koumoutsakos and A. Leonard},
    doi = {10.1017/s0022112095002059},
    journal = {Journal of Fluid Mechanics},
    month = {aug},
    number = {-1},
    pages = {1},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {High-resolution simulations of the flow around an impulsively started cylinder using vortex methods},
    url = {https://doi.org/10.1017%2Fs0022112095002059},
    volume = {296},
    year = {1995}
    }

1994

  • P. Koumoutsakos, A. Leonard, and F. Pépin, “Boundary conditions for viscous vortex methods," Journal of computational physics, vol. 113, iss. 1, pp. 52-61, 1994.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1994a,
    author = {P. Koumoutsakos and A. Leonard and F. P{\'{e}}pin},
    doi = {10.1006/jcph.1994.1117},
    journal = {Journal of Computational Physics},
    month = {jul},
    number = {1},
    pages = {52--61},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Boundary Conditions for Viscous Vortex Methods},
    url = {https://doi.org/10.1006%2Fjcph.1994.1117},
    volume = {113},
    year = {1994}
    }

1993

  • P. Koumoutsakos and A. Leonard, “Improved boundary integral method for inviscid boundary condition applications," AIAA journal, vol. 31, iss. 2, pp. 401-404, 1993.
    [BibTeX] [PDF] [DOI]
    @article{koumoutsakos1993a,
    author = {P. Koumoutsakos and A. Leonard},
    doi = {10.2514/3.11682},
    journal = {{AIAA} Journal},
    month = {feb},
    number = {2},
    pages = {401--404},
    publisher = {American Institute of Aeronautics and Astronautics ({AIAA})},
    section = {Journals},
    title = {Improved boundary integral method for inviscid boundary condition applications},
    url = {https://doi.org/10.2514%2F3.11682},
    volume = {31},
    year = {1993}
    }

2017

  • A. Economides, L. Amoudruz, S. Litvinov, D. Alexeev, S. Nizzero, P. E. Hadjidoukas, D. Rossinelli, and P. Koumoutsakos, “Towards the virtual rheometer," in Proceedings of the platform for advanced scientific computing – PASC ’17, 2017.
    [BibTeX] [PDF] [DOI]
    @inproceedings{economides2017a,
    author = {Athena Economides and Lucas Amoudruz and Sergey Litvinov and Dmitry Alexeev and Sara Nizzero and Panagiotis E. Hadjidoukas and Diego Rossinelli and Petros Koumoutsakos},
    booktitle = {Proceedings of the Platform for Advanced Scientific Computing - {PASC} {\textquotesingle}17},
    doi = {10.1145/3093172.3093226},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {Towards the Virtual Rheometer},
    url = {https://doi.org/10.1145%2F3093172.3093226},
    year = {2017}
    }

  • U. Rasthofer, F. Wermelinger, P. Hadjidoukas, and P. Koumoutsakos, “Large scale simulation of cloud cavitation collapse," Procedia computer science, vol. 108, pp. 1763-1772, 2017.
    [BibTeX] [PDF] [DOI]
    @article{rasthofer2017b,
    author = {U. Rasthofer and F. Wermelinger and P. Hadjidoukas and P. Koumoutsakos},
    doi = {10.1016/j.procs.2017.05.158},
    journal = {Procedia Computer Science},
    pages = {1763--1772},
    publisher = {Elsevier {BV}},
    section = {Proceedings},
    title = {Large Scale Simulation of Cloud Cavitation Collapse},
    url = {https://doi.org/10.1016%2Fj.procs.2017.05.158},
    volume = {108},
    year = {2017}
    }

  • S. Verma, P. Hadjidoukas, P. Wirth, and P. Koumoutsakos, “Multi-objective optimization of artificial swimmers," in 2017 IEEE congress on evolutionary computation (CEC), 2017.
    [BibTeX] [PDF] [DOI]
    @inproceedings{verma2017b,
    author = {Siddhartha Verma and Panagiotis Hadjidoukas and Philipp Wirth and Petros Koumoutsakos},
    booktitle = {2017 {IEEE} Congress on Evolutionary Computation ({CEC})},
    doi = {10.1109/cec.2017.7969422},
    month = {jun},
    publisher = {IEEE},
    section = {Proceedings},
    title = {Multi-objective optimization of artificial swimmers},
    url = {https://doi.org/10.1109%2Fcec.2017.7969422},
    year = {2017}
    }

  • S. Verma, P. Hadjidoukas, P. Wirth, D. Rossinelli, and P. Koumoutsakos, “Pareto optimal swimmers," in Proceedings of the platform for advanced scientific computing – PASC ’17, 2017.
    [BibTeX] [PDF] [DOI]
    @inproceedings{verma2017c,
    author = {Siddhartha Verma and Panagiotis Hadjidoukas and Philipp Wirth and Diego Rossinelli and Petros Koumoutsakos},
    booktitle = {Proceedings of the Platform for Advanced Scientific Computing - {PASC} {\textquotesingle}17},
    doi = {10.1145/3093172.3093232},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {Pareto Optimal Swimmers},
    url = {https://doi.org/10.1145%2F3093172.3093232},
    year = {2017}
    }

  • S. Verma, G. Novati, F. Noca, and P. Koumoutsakos, “Fast motion of heaving airfoils," Procedia computer science, vol. 108, pp. 235-244, 2017.
    [BibTeX] [PDF] [DOI]
    @article{verma2017d,
    author = {Siddhartha Verma and Guido Novati and Flavio Noca and Petros Koumoutsakos},
    doi = {10.1016/j.procs.2017.05.166},
    journal = {Procedia Computer Science},
    pages = {235--244},
    publisher = {Elsevier {BV}},
    section = {Proceedings},
    title = {Fast Motion of Heaving Airfoils},
    url = {https://doi.org/10.1016%2Fj.procs.2017.05.166},
    volume = {108},
    year = {2017}
    }

2016

  • L. Kulakova, P. Angelikopoulos, P. E. Hadjidoukas, C. Papadimitriou, and P. Koumoutsakos, “Approximate Bayesian computation for granular and molecular dynamics simulations," in Proceedings of the platform for advanced scientific computing – PASC ’16, 2016.
    [BibTeX] [PDF] [DOI]
    @inproceedings{kulakova2016a,
    author = {Lina Kulakova and Panagiotis Angelikopoulos and Panagiotis E. Hadjidoukas and Costas Papadimitriou and Petros Koumoutsakos},
    booktitle = {Proceedings of the Platform for Advanced Scientific Computing - {PASC} {\textquotesingle}16},
    doi = {10.1145/2929908.2929918},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {Approximate {B}ayesian Computation for Granular and Molecular Dynamics Simulations},
    url = {https://doi.org/10.1145%2F2929908.2929918},
    year = {2016}
    }

  • F. Wermelinger, B. Hejazialhosseini, P. Hadjidoukas, D. Rossinelli, and P. Koumoutsakos, “An efficient compressible multicomponent flow solver for heterogeneous CPU/GPU architectures," in Proceedings of the platform for advanced scientific computing – PASC ’16, 2016.
    [BibTeX] [PDF] [DOI]
    @inproceedings{wermelinger2016a,
    author = {Fabian Wermelinger and Babak Hejazialhosseini and Panagiotis Hadjidoukas and Diego Rossinelli and Petros Koumoutsakos},
    booktitle = {Proceedings of the Platform for Advanced Scientific Computing - {PASC} {\textquotesingle}16},
    doi = {10.1145/2929908.2929914},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {An Efficient Compressible Multicomponent Flow Solver for Heterogeneous {CPU}/{GPU} Architectures},
    url = {https://doi.org/10.1145%2F2929908.2929914},
    year = {2016}
    }

2015

  • P. E. Hadjidoukas, D. Rossinelli, F. Wermelinger, J. Sukys, U. Rasthofer, C. Conti, B. Hejazialhosseini, and P. Koumoutsakos, “High throughput simulations of two-phase flows on Blue Gene/Q," in Parallel computing: on the road to exascale, proceedings of the international conference on parallel computing, parco 2015, 1-4 september 2015, edinburgh, scotland, UK, 2015, pp. 767-776.
    [BibTeX] [PDF] [DOI]
    @inproceedings{hadjidoukas2015c,
    author = {Panagiotis E. Hadjidoukas and Diego Rossinelli and Fabian Wermelinger and Jonas Sukys and Ursula Rasthofer and Christian Conti and Babak Hejazialhosseini and Petros Koumoutsakos},
    booktitle = {Parallel Computing: On the Road to Exascale, Proceedings of the International Conference on Parallel Computing, ParCo 2015, 1-4 September 2015, Edinburgh, Scotland, {UK}},
    doi = {10.3233/978-1-61499-621-7-767},
    pages = {767--776},
    section = {Proceedings},
    title = {High throughput simulations of two-phase flows on {Blue Gene/Q}},
    url = {http://dx.doi.org/10.3233/978-1-61499-621-7-767},
    year = {2015}
    }

  • P. E. Hadjidoukas, D. Rossinelli, B. Hejazialhosseini, and P. Koumoutsakos, “From 11 to 14.4 PFLOPs: performance optimization for finite volume flow solver," in Proceedings of the 3rd international conference on exascale applications and software, 2015.
    [BibTeX] [PDF]
    @inproceedings{hadjidoukas2015d,
    author = {Panagiotis E. Hadjidoukas and Diego Rossinelli and Babak Hejazialhosseini and Petros Koumoutsakos},
    booktitle = {Proceedings of the 3rd International Conference on Exascale Applications and Software},
    section = {Proceedings},
    title = {From 11 to 14.4 {PFLOPs}: Performance Optimization for Finite Volume Flow Solver},
    year = {2015}
    }

  • D. Rossinelli, Y. Tang, K. Lykov, D. Alexeev, M. Bernaschi, P. Hadjidoukas, M. Bisson, W. Joubert, C. Conti, G. Karniadakis, M. Fatica, I. Pivkin, and P. Koumoutsakos, “The In-Silico Lab-on-a-Chip: petascale and high-throughput simulations of microfluidics at cell resolution," in Proceedings of the international conference for high performance computing, networking, storage and analysis on – SC ’15, 2015.
    [BibTeX] [PDF] [DOI]
    @inproceedings{rossinelli2015b,
    author = {Diego Rossinelli and Yu-Hang Tang and Kirill Lykov and Dmitry Alexeev and Massimo Bernaschi and Panagiotis Hadjidoukas and Mauro Bisson and Wayne Joubert and Christian Conti and George Karniadakis and Massimiliano Fatica and Igor Pivkin and Petros Koumoutsakos},
    booktitle = {Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis on - {SC} {\textquotesingle}15},
    doi = {10.1145/2807591.2807677},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {The {In-Silico Lab-on-a-Chip}: Petascale and High-Throughput Simulations of Microfluidics at Cell Resolution},
    url = {https://doi.org/10.1145%2F2807591.2807677},
    year = {2015}
    }

2013

  • C. Papadimitriou, P. Angelikopoulos, P. Koumoutsakos, and D. Papadioti, “Efficient techniques for Bayesian inverse modeling of large-order computational models," in Icossar 2013: 11th international conference on structural safety & reliability, 2013.
    [BibTeX] [PDF]
    @inproceedings{papadimitriou2013a,
    author = {Papadimitriou, C and Angelikopoulos, P and Koumoutsakos, P and Papadioti, DC},
    booktitle = {ICOSSAR 2013: 11th International Conference on Structural Safety \& Reliability},
    section = {Proceedings},
    title = {Efficient techniques for {B}ayesian inverse modeling of large-order computational models},
    year = {2013}
    }

  • D. Rossinelli, P. Koumoutsakos, B. Hejazialhosseini, P. Hadjidoukas, C. Bekas, A. Curioni, A. Bertsch, S. Futral, S. J. Schmidt, and N. A. Adams, “11 PFLOP/s simulations of cloud cavitation collapse," in Proceedings of the international conference for high performance computing, networking, storage and analysis on – SC ’13, 2013.
    [BibTeX] [PDF] [DOI]
    @inproceedings{rossinelli2013a,
    author = {Diego Rossinelli and Petros Koumoutsakos and Babak Hejazialhosseini and Panagiotis Hadjidoukas and Costas Bekas and Alessandro Curioni and Adam Bertsch and Scott Futral and Steffen J. Schmidt and Nikolaus A. Adams},
    booktitle = {Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis on - {SC} {\textquotesingle}13},
    doi = {10.1145/2503210.2504565},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {11 {PFLOP}/s simulations of cloud cavitation collapse},
    url = {https://doi.org/10.1145%2F2503210.2504565},
    year = {2013}
    }

  • C. Voglis, P. E. Hadjidoukas, K. E. Parsopoulos, D. G. Papageorgiou, and I. E. Lagaris, “Adaptive memetic particle swarm optimization with variable local search pool size," in Proceeding of the fifteenth annual conference on genetic and evolutionary computation conference (GECCO), 2013.
    [BibTeX] [PDF] [DOI]
    @inproceedings{voglis2013b,
    author = {Costas Voglis and Panagiotis E. Hadjidoukas and Konstantinos E. Parsopoulos and Dimitrios G. Papageorgiou and Isaac E. Lagaris},
    booktitle = {Proceeding of the fifteenth annual conference on Genetic and evolutionary computation conference {(GECCO)}},
    doi = {10.1145/2463372.2463383},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {Adaptive memetic particle swarm optimization with variable local search pool size},
    url = {https://doi.org/10.1145%2F2463372.2463383},
    year = {2013}
    }

2012

  • B. Hejazialhosseini, D. Rossinelli, C. Conti, and P. Koumoutsakos, “High throughput software for direct numerical simulations of compressible two-phase flows," in 2012 international conference for high performance computing, networking, storage and analysis, 2012.
    [BibTeX] [PDF] [DOI]
    @inproceedings{hejazialhosseini2012a,
    author = {Babak Hejazialhosseini and Diego Rossinelli and Christian Conti and Petros Koumoutsakos},
    booktitle = {2012 International Conference for High Performance Computing, Networking, Storage and Analysis},
    doi = {10.1109/sc.2012.66},
    month = {nov},
    publisher = {IEEE},
    section = {Proceedings},
    title = {High throughput software for direct numerical simulations of compressible two-phase flows},
    url = {https://doi.org/10.1109%2Fsc.2012.66},
    year = {2012}
    }

2011

  • D. Rossinelli, L. Chatagny, and P. Koumoutsakos, “Evolutionary optimization of scalar transport in cylinder arrays on multiGPU/multicore architectures," in Proc. eurogen, 2011.
    [BibTeX] [PDF]
    @inproceedings{rossinelli2011c,
    author = {Rossinelli, D. and Chatagny, L. and Koumoutsakos, P.},
    booktitle = {Proc. EuroGen},
    section = {Proceedings},
    title = {Evolutionary optimization of scalar transport in cylinder arrays on {multiGPU}/multicore architectures},
    year = {2011}
    }

2007

  • K. Fukagata, S. Kern, P. Chatelain, P. Koumoutsakos, and N. Kasagi, “Optimization of an anisotropic compliant surface for turbulent friction drag reduction," in Proc. 5th int symp. on turbulence and shear flow phenomena, 2007, pp. 727-732.
    [BibTeX] [DOI]
    @inproceedings{fukagata2007a,
    author = {Koji Fukagata and Stefan Kern and Philippe Chatelain and Petros Koumoutsakos and Nobuhide Kasagi},
    booktitle = {Proc. 5th Int Symp. on Turbulence and Shear Flow Phenomena},
    doi = {10.1080/14685240802441126},
    journal = {Journal of Turbulence},
    pages = {727--732},
    publisher = {Informa {UK} Limited},
    section = {Proceedings},
    title = {Optimization of an anisotropic compliant surface for turbulent friction drag reduction},
    url = {https://doi.org/10.1080%2F14685240802441126},
    volume = {9},
    year = {2007}
    }

  • S. Kern, P. Chatelain, and P. Koumoutsakos, “Modeling, simulation and optimization of anguilliform swimmers," in Bio-mechanisms of swimming and flying, Springer Japan, 2007, pp. 167-178.
    [BibTeX] [DOI]
    @incollection{kern2007b,
    author = {Stefan Kern and Philippe Chatelain and Petros Koumoutsakos},
    booktitle = {Bio-mechanisms of Swimming and Flying},
    doi = {10.1007/978-4-431-73380-5_14},
    pages = {167--178},
    publisher = {Springer Japan},
    section = {Proceedings},
    title = {Modeling, Simulation and Optimization of Anguilliform Swimmers},
    url = {https://doi.org/10.1007%2F978-4-431-73380-5_14},
    year = {2007}
    }

  • S. Kern, N. Hansen, and P. Koumoutsakos, “Optimization of simulated fish swimming using efficient local quadratic meta-models and evolution strategies," in Eurogen, 2007.
    [BibTeX]
    @inproceedings{kern2007c,
    author = {Kern, S. and Hansen, N. and Koumoutsakos, P.},
    booktitle = {Eurogen},
    section = {Proceedings},
    title = {Optimization of Simulated Fish Swimming using Efficient Local Quadratic Meta-models and Evolution Strategies},
    year = {2007}
    }

  • G. Morgenthal and J. H. Walther, “An immersed interface method for the vortex-in-cell algorithm," Computers & structures, vol. 85, iss. 11-14, pp. 712-726, 2007.
    [BibTeX] [DOI]
    @article{morgenthal2007b,
    author = {G. Morgenthal and J.H. Walther},
    doi = {10.1016/j.compstruc.2007.01.020},
    journal = {Computers {\&} Structures},
    month = {jun},
    number = {11-14},
    pages = {712--726},
    publisher = {Elsevier {BV}},
    section = {Proceedings},
    title = {An immersed interface method for the Vortex-In-Cell algorithm},
    url = {https://doi.org/10.1016%2Fj.compstruc.2007.01.020},
    volume = {85},
    year = {2007}
    }

  • J. H. Walther, M. Guénot, E. Machefaux, J. T. Rasmussen, P. Chatelain, V. L. Okulov, J. N. Sørensen, M. Bergdorf, and P. Koumoutsakos, “A numerical study of the stabilitiy of helical vortices using vortex methods," Journal of physics: conference series, vol. 75, p. 12034, 2007.
    [BibTeX] [DOI]
    @article{walther2007a,
    author = {J H Walther and M Gu{\'{e}}not and E Machefaux and J T Rasmussen and P Chatelain and V L Okulov and J N S{\o}rensen and M Bergdorf and P Koumoutsakos},
    doi = {10.1088/1742-6596/75/1/012034},
    journal = {Journal of Physics: Conference Series},
    month = {jul},
    pages = {012034},
    publisher = {{IOP} Publishing},
    section = {Proceedings},
    title = {A numerical study of the stabilitiy of helical vortices using vortex methods},
    url = {https://doi.org/10.1088%2F1742-6596%2F75%2F1%2F012034},
    volume = {75},
    year = {2007}
    }

2006

  • A. Auger and N. Hansen, “Reconsidering the progress rate theory for evolution strategies in finite dimensions," in Proceedings of the 8th annual conference on genetic and evolutionary computation (GECCO), 2006.
    [BibTeX] [DOI]
    @inproceedings{auger2006b,
    author = {Anne Auger and Nikolaus Hansen},
    booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation {(GECCO)}},
    doi = {10.1145/1143997.1144081},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {Reconsidering the progress rate theory for evolution strategies in finite dimensions},
    url = {https://doi.org/10.1145%2F1143997.1144081},
    year = {2006}
    }

  • M. Bergdorf and P. Koumoutsakos, “Multiresolution simulations using particles," in Lecture notes in computer science, Springer Berlin Heidelberg, 2006, pp. 391-402.
    [BibTeX] [DOI]
    @incollection{bergdorf2006b,
    author = {Michael Bergdorf and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-540-71351-7_30},
    pages = {391--402},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Multiresolution Simulations Using Particles},
    url = {https://doi.org/10.1007%2F978-3-540-71351-7_30},
    year = {2006}
    }

  • N. Hansen, F. Gemperle, A. Auger, and P. Koumoutsakos, “When do heavy-tail distributions help?," in Parallel problem solving from nature – PPSN IX, Springer Berlin Heidelberg, 2006, pp. 62-71.
    [BibTeX] [DOI]
    @incollection{hansen2006c,
    author = {Nikolaus Hansen and Fabian Gemperle and Anne Auger and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature - {PPSN} {IX}},
    doi = {10.1007/11844297_7},
    pages = {62--71},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {When Do Heavy-Tail Distributions Help?},
    url = {https://doi.org/10.1007%2F11844297_7},
    year = {2006}
    }

  • C. Igel, T. Suttorp, and N. Hansen, “A computational efficient covariance matrix update and a (1+1)-CMA for evolution strategies," in Proceedings of the 8th annual conference on genetic and evolutionary computation (GECCO), 2006.
    [BibTeX] [DOI]
    @inproceedings{igel2006a,
    author = {Christian Igel and Thorsten Suttorp and Nikolaus Hansen},
    booktitle = {Proceedings of the 8th annual conference on Genetic and evolutionary computation {(GECCO)}},
    doi = {10.1145/1143997.1144082},
    publisher = {{ACM} Press},
    section = {Proceedings},
    title = {A computational efficient covariance matrix update and a (1+1)-{CMA} for evolution strategies},
    url = {https://doi.org/10.1145%2F1143997.1144082},
    year = {2006}
    }

  • S. Kern, N. Hansen, and P. Koumoutsakos, “Local meta-models for optimization using evolution strategies," in Parallel problem solving from nature – PPSN IX, Springer Berlin Heidelberg, 2006, pp. 939-948.
    [BibTeX] [PDF] [DOI]
    @incollection{kern2006c,
    author = {Stefan Kern and Nikolaus Hansen and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature - {PPSN} {IX}},
    doi = {10.1007/11844297_95},
    pages = {939--948},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Local Meta-models for Optimization Using Evolution Strategies},
    url = {https://doi.org/10.1007%2F11844297_95},
    year = {2006}
    }

2005

  • A. Auger and N. Hansen, “Performance evaluation of an advanced local search evolutionary algorithm," in 2005 IEEE congress on evolutionary computation, 2005.
    [BibTeX] [DOI]
    @inproceedings{auger2005a,
    author = {A. Auger and N. Hansen},
    booktitle = {2005 {IEEE} Congress on Evolutionary Computation},
    doi = {10.1109/cec.2005.1554903},
    publisher = {IEEE},
    section = {Proceedings},
    title = {Performance Evaluation of an Advanced Local Search Evolutionary Algorithm},
    url = {https://doi.org/10.1109%2Fcec.2005.1554903},
    year = {2005}
    }

  • A. Auger and N. Hansen, “A restart CMA evolution strategy with increasing population size," in 2005 IEEE congress on evolutionary computation, 2005.
    [BibTeX] [DOI]
    @inproceedings{auger2005b,
    author = {A. Auger and N. Hansen},
    booktitle = {2005 {IEEE} Congress on Evolutionary Computation},
    doi = {10.1109/cec.2005.1554902},
    publisher = {IEEE},
    section = {Proceedings},
    title = {A Restart {CMA} Evolution Strategy With Increasing Population Size},
    url = {https://doi.org/10.1109%2Fcec.2005.1554902},
    year = {2005}
    }

  • M. Bergdorf and P. Koumoutsakos, “Multiresolution particle methods," in Lecture notes in computational science and engineering, Springer Berlin Heidelberg, 2005, pp. 49-61.
    [BibTeX] [DOI]
    @incollection{bergdorf2005b,
    author = {Michael Bergdorf and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computational Science and Engineering},
    doi = {10.1007/978-3-540-34234-2_4},
    pages = {49--61},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Multiresolution Particle Methods},
    url = {https://doi.org/10.1007%2F978-3-540-34234-2_4},
    year = {2005}
    }

2004

  • P. Gonnet, U. Zimmerli, J. H. Walther, T. Werder, and P. Koumoutsakos, “Wetting and hydrophobicity of nanoscale systems with impurities," Nanotech, pp. 69-72, 2004.
    [BibTeX]
    @article{gonnet2004b,
    author = {Gonnet, P. and Zimmerli, U. and Walther, J.H. and Werder, T. and Koumoutsakos, P.},
    journal = {Nanotech},
    pages = {69--72},
    section = {Proceedings},
    title = {Wetting and Hydrophobicity of Nanoscale Systems with Impurities},
    year = {2004}
    }

  • N. Hansen and S. Kern, “Evaluating the CMA evolution strategy on multimodal test functions," in Lecture notes in computer science, Springer Berlin Heidelberg, 2004, pp. 282-291.
    [BibTeX] [PDF] [DOI]
    @incollection{hansen2004a,
    author = {Nikolaus Hansen and Stefan Kern},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-540-30217-9_29},
    pages = {282--291},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Evaluating the {CMA} Evolution Strategy on Multimodal Test Functions},
    url = {https://doi.org/10.1007%2F978-3-540-30217-9_29},
    year = {2004}
    }

  • R. Jaffe, J. H. Walther, U. Zimmerli, and P. Koumoutsakos, “Modeling the interaction between ethylene diamine and water films on the surface of a carbon nanotube," in 206th joint international meeting of the electrochemical society, 2004.
    [BibTeX]
    @inproceedings{jaffe2004b,
    author = {Jaffe, R. and Walther, J.H. and Zimmerli, U. and Koumoutsakos, P.},
    booktitle = {206th Joint International Meeting of the Electrochemical Society},
    section = {Proceedings},
    title = {Modeling the Interaction Between Ethylene Diamine and Water Films on the Surface of a Carbon Nanotube},
    year = {2004}
    }

  • S. C. Kassinos, J. H. Walther, E. Kotsalis, and P. Koumoutsakos, “Flow of aqueous solutions in carbon nanotubes," in Multiscale modelling and simulation, Springer Berlin Heidelberg, 2004, pp. 215-226.
    [BibTeX] [DOI]
    @incollection{kassinos2004a,
    author = {S. C. Kassinos and J. H. Walther and E. Kotsalis and P. Koumoutsakos},
    booktitle = {Multiscale Modelling and Simulation},
    doi = {10.1007/978-3-642-18756-8_16},
    pages = {215--226},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Flow of Aqueous Solutions in Carbon Nanotubes},
    url = {https://doi.org/10.1007%2F978-3-642-18756-8_16},
    year = {2004}
    }

  • P. Koumoutsakos, U. Zimmerli, T. Werder, and J. Walther, “Nanoscale fluid mechanics," in The handbook of nanotechnology. nanometer structures: theory, modeling, and simulation, SPIE, 2004, pp. 319-393.
    [BibTeX] [DOI]
    @incollection{koumoutsakos2004a,
    author = {Petros Koumoutsakos and Urs Zimmerli and Thomas Werder and Jens Walther},
    booktitle = {The Handbook of Nanotechnology. Nanometer Structures: Theory, Modeling, and Simulation},
    doi = {10.1117/3.537698.ch8},
    pages = {319--393},
    publisher = {SPIE},
    section = {Proceedings},
    title = {Nanoscale Fluid Mechanics},
    url = {https://doi.org/10.1117%2F3.537698.ch8},
    year = {2004}
    }

  • J. Ocenasek, S. Kern, N. Hansen, and P. Koumoutsakos, “A mixed Bayesian optimization algorithm with variance adaptation," in Lecture notes in computer science, Springer Berlin Heidelberg, 2004, pp. 352-361.
    [BibTeX] [PDF] [DOI]
    @incollection{ocenasek2004a,
    author = {Jiri Ocenasek and Stefan Kern and Nikolaus Hansen and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/978-3-540-30217-9_36},
    pages = {352--361},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {A Mixed {B}ayesian Optimization Algorithm with Variance Adaptation},
    url = {https://doi.org/10.1007%2F978-3-540-30217-9_36},
    year = {2004}
    }

  • P. Poncet and P. Koumoutsakos, “Optimization of vortex shedding in 3d wakes using belt actuators," in Isope, 2004, pp. 65-77.
    [BibTeX] [PDF] [DOI]
    @inproceedings{poncet2004a,
    author = {Philippe Poncet and Petros Koumoutsakos},
    booktitle = {ISOPE},
    doi = {10.1016/j.crme.2004.10.007},
    month = {jan},
    pages = {65--77},
    publisher = {Elsevier {BV}},
    section = {Proceedings},
    title = {Optimization of Vortex Shedding in 3D Wakes using Belt Actuators},
    url = {https://doi.org/10.1016%2Fj.crme.2004.10.007},
    volume = {333},
    year = {2004}
    }

  • T. Werder, J. H. Walther, J. Asikainen, and P. Koumoutsakos, “Continuum-particle hybrid methods for dense fluids," in Multiscale modelling and simulation, Springer Berlin Heidelberg, 2004, pp. 227-235.
    [BibTeX] [DOI]
    @incollection{werder2004a,
    author = {Thomas Werder and Jens H. Walther and Joonas Asikainen and Petros Koumoutsakos},
    booktitle = {Multiscale Modelling and Simulation},
    doi = {10.1007/978-3-642-18756-8_17},
    pages = {227--235},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Continuum-particle hybrid methods for dense fluids},
    url = {https://doi.org/10.1007%2F978-3-642-18756-8_17},
    year = {2004}
    }

  • U. Zimmerli, M. Parrinello, and P. Koumoutsakos, “Dispersion corrected density functionals applied to the water naphthalene cluster," in Multiscale modelling and simulation, Springer Berlin Heidelberg, 2004, pp. 205-214.
    [BibTeX] [DOI]
    @incollection{zimmerli2004b,
    author = {Urs Zimmerli and Michele Parrinello and Petros Koumoutsakos},
    booktitle = {Multiscale Modelling and Simulation},
    doi = {10.1007/978-3-642-18756-8_15},
    pages = {205--214},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Dispersion corrected density functionals applied to the water naphthalene cluster},
    url = {https://doi.org/10.1007%2F978-3-642-18756-8_15},
    year = {2004}
    }

2003

  • D. Bueche, G. Guidati, and P. Stoll, “Automated design optimization of compressor blades for stationary, large-scale turbomachinery," in Volume 6: turbo expo 2003, parts a and b, 2003.
    [BibTeX] [PDF] [DOI]
    @inproceedings{bueche2003a,
    author = {Dirk Bueche and Gianfranco Guidati and Peter Stoll},
    booktitle = {Volume 6: Turbo Expo 2003, Parts A and B},
    doi = {10.1115/gt2003-38421},
    publisher = {ASME},
    section = {Proceedings},
    title = {Automated Design Optimization of Compressor Blades for Stationary, Large-Scale Turbomachinery},
    url = {https://doi.org/10.1115%2Fgt2003-38421},
    year = {2003}
    }

  • D. Bueche, N. Schraudolph, and P. Koumoutsakos, “Accelerating evolutionary algorithms using fitness function models," in Genetic and evolutionary computation conference, 2003.
    [BibTeX] [PDF]
    @inproceedings{bueche2003b,
    author = {Bueche, D. and Schraudolph, N. and Koumoutsakos, P.},
    booktitle = {Genetic and Evolutionary Computation Conference},
    section = {Proceedings},
    title = {Accelerating Evolutionary Algorithms Using Fitness Function Models},
    year = {2003}
    }

  • D. Bueche, S. Mueller, and P. Koumoutsakos, “Self-adaptation for multi-objective evolutionary algorithms," in Lecture notes in computer science, Springer Berlin Heidelberg, 2003, pp. 267-281.
    [BibTeX] [PDF] [DOI]
    @incollection{bueche2003c,
    author = {Dirk Bueche and Sibylle Mueller and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/3-540-36970-8_19},
    pages = {267--281},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Self-Adaptation for Multi-objective Evolutionary Algorithms},
    url = {https://doi.org/10.1007%2F3-540-36970-8_19},
    year = {2003}
    }

  • D. Bueche, P. Stoll, and P. Koumoutsakos, “Multi-objective evolutionary algorithm for optimization of combustion processes," in Manipulation and control of jets in crossflow, Springer Vienna, 2003, pp. 157-169.
    [BibTeX] [DOI]
    @incollection{bueche2003d,
    author = {Dirk Bueche and Peter Stoll and Petros Koumoutsakos},
    booktitle = {Manipulation and Control of Jets in Crossflow},
    doi = {10.1007/978-3-7091-2792-6_12},
    pages = {157--169},
    publisher = {Springer Vienna},
    section = {Proceedings},
    title = {Multi-Objective Evolutionary Algorithm for Optimization of Combustion Processes},
    url = {https://doi.org/10.1007%2F978-3-7091-2792-6_12},
    year = {2003}
    }

  • S. Hieber, J. Walther, and P. Koumoutsakos, “Fluid-structure interaction using SPH," in Proceedings of the CoLab summer school on multiscale modeling and simulation, 2003.
    [BibTeX]
    @inproceedings{hieber2003a,
    author = {Hieber, S. and Walther, J. and Koumoutsakos, P.},
    booktitle = {Proceedings of the {CoLab} summer school on Multiscale Modeling and Simulation},
    section = {Proceedings},
    title = {Fluid-Structure Interaction using {SPH}},
    year = {2003}
    }

  • S. Hieber, J. Walther, and P. Koumoutsakos, “Particle flow simulations for surgical planning," in Proceedings of the international symposium on computer aided surgery around the head, 2003.
    [BibTeX]
    @inproceedings{hieber2003b,
    author = {Hieber, S. and Walther, J. and Koumoutsakos, P.},
    booktitle = {Proceedings of the International Symposium on Computer Aided Surgery around the Head},
    section = {Proceedings},
    title = {Particle flow simulations for surgical planning},
    year = {2003}
    }

  • S. Kern, S. D. Mueller, D. Bueche, N. Hansen, and P. Koumoutsakos, “Learning probability distributions in continuous evolutionary algorithms," in Workshop on fundamentals in evolutionary algorithms, thirtieth international colloquium on automata, 2003.
    [BibTeX]
    @inproceedings{kern2003a,
    author = {Kern, S. and Mueller, S. D. and Bueche, D. and Hansen, N. and Koumoutsakos, P.},
    booktitle = {Workshop on Fundamentals in Evolutionary Algorithms, Thirtieth International Colloquium on Automata},
    section = {Proceedings},
    title = {Learning Probability Distributions in Continuous Evolutionary Algorithms},
    year = {2003}
    }

  • P. Koumoutsakos, S. D. Mueller, D. Bueche, and M. Milano, “Stochastic optimization for fluid dynamic applications," in Evolutionary methods for design, optimization and control: applications to industrial and societal problems, 2003.
    [BibTeX]
    @inproceedings{koumoutsakos2003a,
    author = {Koumoutsakos, P. and Mueller, S. D. and Bueche, D. and Milano, M.},
    booktitle = {Evolutionary Methods for Design, Optimization and Control: Applications to Industrial and Societal Problems},
    section = {Proceedings},
    title = {Stochastic optimization for fluid dynamic applications},
    year = {2003}
    }

  • P. Koumoutsakos, R. Jaffe, T. Werder, and J. H. Walther, “On the validity of the no-slip condition in nanofluidics," in Nanotechnology conference and trade show, 2003.
    [BibTeX] [PDF]
    @inproceedings{koumoutsakos2003b,
    author = {Koumoutsakos, P. and Jaffe, R. and Werder, T. and Walther, J. H.},
    booktitle = {Nanotechnology Conference and Trade Show},
    section = {Proceedings},
    title = {On the Validity of the No-Slip Condition in Nanofluidics},
    year = {2003}
    }

  • P. Koumoutsakos, U. Zimmerli, and J. H. Walther, “Simulations of carbon nanotubes in aqueous environments," in ASME international mechanical engineering congress, 2003.
    [BibTeX]
    @inproceedings{koumoutsakos2003c,
    author = {Koumoutsakos, P. and Zimmerli, U. and Walther, J. H.},
    booktitle = {{ASME} International Mechanical Engineering Congress},
    section = {Proceedings},
    title = {Simulations of carbon nanotubes in aqueous environments},
    year = {2003}
    }

  • A. Larsen and J. H. Walther, “Discrete vortex simulation of vortex excitation and mitigation in bridge engineering," in Computational fluid and solid mechanics, Elsevier, 2003, pp. 1397-1400.
    [BibTeX] [PDF] [DOI]
    @incollection{larsen2003a,
    author = {Allan Larsen and Jens H. Walther},
    booktitle = {Computational Fluid and Solid Mechanics},
    doi = {10.1016/b978-008044046-0.50342-0},
    pages = {1397--1400},
    publisher = {Elsevier},
    section = {Proceedings},
    title = {Discrete vortex simulation of vortex excitation and mitigation in bridge engineering},
    url = {https://doi.org/10.1016%2Fb978-008044046-0.50342-0},
    year = {2003}
    }

  • S. D. Mueller, M. Fehr, and P. Koumoutsakos, “Solving constrained optimization problems using the cma-evolution strategy combined with the augmented lagrangian method," in Workshop on fundamentals in evolutionary algorithms, thirtieth international colloquium on automata, 2003.
    [BibTeX]
    @inproceedings{mueller2003a,
    author = {Mueller, S. D. and Fehr, M. and Koumoutsakos, P.},
    booktitle = {Workshop on Fundamentals in Evolutionary Algorithms, Thirtieth International Colloquium on Automata},
    section = {Proceedings},
    title = {Solving Constrained Optimization Problems using the CMA-Evolution Strategy combined with the Augmented Lagrangian Method},
    year = {2003}
    }

  • S. D. Mueller, N. Schraudolph, and P. Koumoutsakos, “Evolutionary and gradient-based algorithms for Lennard-Jones cluster optimization," in Workshop proceedings of the genetic and evolutionary computation conference, 2003.
    [BibTeX]
    @inproceedings{mueller2003b,
    author = {Mueller, S. D. and Schraudolph, N. and Koumoutsakos, P.},
    booktitle = {Workshop proceedings of the Genetic and Evolutionary Computation Conference},
    section = {Proceedings},
    title = {Evolutionary and Gradient-Based Algorithms for {L}ennard-{J}ones Cluster Optimization},
    year = {2003}
    }

  • C. O. Paschereit, B. Schuermans, and D. Bueche, “Combustion process optimization using evolutionary algorithm," in Volume 2: turbo expo, 2003.
    [BibTeX] [PDF] [DOI]
    @inproceedings{paschereit2003a,
    author = {Christian Oliver Paschereit and Bruno Schuermans and Dirk Bueche},
    booktitle = {Volume 2: Turbo Expo},
    doi = {10.1115/gt2003-38393},
    publisher = {ASME},
    section = {Proceedings},
    title = {Combustion Process Optimization Using Evolutionary Algorithm},
    url = {https://doi.org/10.1115%2Fgt2003-38393},
    year = {2003}
    }

  • I. Sbalzarini, P. Koumoutsakos, A. Mezzacasa, and A. Helenius, “Computing diffusion in intracellular compartments: the influence of organelle geometry," in New horizons in molecular sciences and systems: an integrated approach, 2003.
    [BibTeX]
    @inproceedings{sbalzarini2003a,
    author = {Sbalzarini, I. and Koumoutsakos, P. and Mezzacasa, A. and Helenius, A.},
    booktitle = {New Horizons in Molecular Sciences and Systems: An Integrated Approach},
    section = {Proceedings},
    title = {Computing diffusion in intracellular compartments: The influence of organelle geometry},
    year = {2003}
    }

  • J. H. Walther, R. L. Jaffe, T. Werder, and P. Koumoutsakos, “Slip boundary conditions for water flows in hydrophobic nanoscale geometries," in Nanotech, 2003.
    [BibTeX]
    @inproceedings{walther2003b,
    author = {Walther, J. H. and Jaffe, R. L. and Werder, T. and Koumoutsakos, P.},
    booktitle = {Nanotech},
    section = {Proceedings},
    title = {Slip boundary conditions for water flows in hydrophobic nanoscale geometries},
    year = {2003}
    }

  • J. H. Walther, T. Werder, U. Zimmerli, and P. Koumoutsakos, “Molecular fluid mechanics of carbon nanotubes," in New horizons in molecular sciences and systems: an integrated approach, 2003.
    [BibTeX]
    @inproceedings{walther2003c,
    author = {Walther, J. H. and Werder, T. and Zimmerli, U. and Koumoutsakos, P.},
    booktitle = {New Horizons in Molecular Sciences and Systems: An Integrated Approach},
    section = {Proceedings},
    title = {Molecular fluid mechanics of carbon nanotubes},
    year = {2003}
    }

  • J. H. Walther, “Molecular dynamics simulations of aqueous potassium chloride droplets on graphite," in 81st international bunsen discussion meeting “interfacial water in chemistry and biology", 2003.
    [BibTeX]
    @inproceedings{walther2003d,
    author = {Walther, J. H.},
    booktitle = {81st International Bunsen Discussion Meeting "Interfacial Water in Chemistry and Biology"},
    section = {Proceedings},
    title = {Molecular dynamics simulations of aqueous potassium chloride droplets on graphite},
    year = {2003}
    }

  • J. H. Walther, R. L. Jaffe, T. Werder, and P. Koumoutsakos, “Carbon nanotubes as biosensors – a molecular dynamics study," in E-mrs spring meeting, 2003.
    [BibTeX]
    @inproceedings{walther2003e,
    author = {Walther, J. H. and Jaffe, R. L. and Werder, T. and Koumoutsakos, P.},
    booktitle = {E-MRS Spring Meeting},
    note = {Symposium B. Advanced Multifunctional Nanocarbon materials and nanosystems},
    section = {Proceedings},
    title = {Carbon Nanotubes as Biosensors - A Molecular Dynamics Study},
    year = {2003}
    }

  • T. Werder, J. H. Walther, R. L. Jaffe, and P. Koumoutsakos, “Water-carbon interactions: potential energy calibration using experimental data," in Nanotechnology conference and trade show, 2003.
    [BibTeX] [PDF]
    @inproceedings{werder2003b,
    author = {Werder, T. and Walther, J. H. and Jaffe, R. L. and Koumoutsakos, P.},
    booktitle = {Nanotechnology Conference and Trade Show},
    section = {Proceedings},
    title = {Water-Carbon Interactions: Potential Energy Calibration Using Experimental Data},
    year = {2003}
    }

  • T. Werder, J. H. Walther, and P. Koumoutsakos, “Nano fluid mechanics of carbon nanotubes – atomistic and multiscale simulations," in Asme international mechanical engineering congress, 2003.
    [BibTeX]
    @inproceedings{werder2003c,
    author = {Werder, T. and Walther, J. H. and Koumoutsakos, P.},
    booktitle = {ASME International Mechanical Engineering Congress},
    section = {Proceedings},
    title = {Nano fluid mechanics of carbon nanotubes - atomistic and multiscale simulations},
    year = {2003}
    }

  • U. Zimmerli, P. Koumoutsakos, and M. Parrinello, “Bounds for water graphite interaction from DFT," in Program of the cpmd, 2003.
    [BibTeX]
    @inproceedings{zimmerli2003a,
    author = {Zimmerli, U. and Koumoutsakos, P. and Parrinello, M.},
    booktitle = {Program of the CPMD},
    section = {Proceedings},
    title = {Bounds for water graphite interaction from {DFT}},
    year = {2003}
    }

2002

  • D. Bueche, M. Milano, and P. Koumoutsakos, “Self-organizing maps for multi-objective optimization," in Genetic and evolutionary computation conference, 2002.
    [BibTeX] [PDF]
    @inproceedings{bueche2002a,
    author = {Bueche, D. and Milano, M. and Koumoutsakos, P.},
    booktitle = {Genetic and Evolutionary Computation Conference},
    section = {Proceedings},
    title = {Self-Organizing Maps for Multi-Objective Optimization},
    year = {2002}
    }

  • D. Bueche, G. Guidati, P. Stoll, and P. Koumoutsakos, “Self-organizing maps for pareto optimization of airfoils," in Parallel problem solving from nature — PPSN VII, Springer Berlin Heidelberg, 2002, pp. 122-131.
    [BibTeX] [PDF] [DOI]
    @incollection{bueche2002b,
    author = {Dirk Bueche and Gianfranco Guidati and Peter Stoll and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature {\textemdash} {PPSN} {VII}},
    doi = {10.1007/3-540-45712-7_12},
    pages = {122--131},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Self-organizing Maps for Pareto Optimization of Airfoils},
    url = {https://doi.org/10.1007%2F3-540-45712-7_12},
    year = {2002}
    }

  • P. Catalano, M. Wang, G. Iaccarino, I. F. Sbalzarini, and P. Koumoutsakos, “Optimization of cylinder flow control via zero net mass flux actuators," in Proceedings of the CTR summer program, 2002.
    [BibTeX] [PDF]
    @inproceedings{catalano2002a,
    author = {Catalano, P. and Wang, M. and Iaccarino, G. and Sbalzarini, I. F. and Koumoutsakos, P.},
    booktitle = {Proceedings of the {CTR} summer program},
    section = {Proceedings},
    title = {Optimization of cylinder flow control via zero net mass flux actuators},
    year = {2002}
    }

  • G. -H. Cottet, A. Ghoniem, and P. Koumoutsakos, “No title given!," in 4th international workshop on vortex flows and related numerical methods, 2002.
    [BibTeX]
    @inproceedings{cottet2002a,
    author = {Cottet, G.-H and Ghoniem, A. and Koumoutsakos, P.},
    booktitle = {4th International Workshop on Vortex Flows and Related Numerical Methods},
    section = {Proceedings},
    title = {NO TITLE GIVEN!},
    year = {2002}
    }

  • R. Gaemperle, S. D. Mueller, and P. Koumoutsakos, “A parameter study for differential evolution," in Advances in intelligent systems, fuzzy systems, evolutionary computation, 2002, pp. 293-298.
    [BibTeX] [PDF]
    @inproceedings{gaemperle2002a,
    author = {Gaemperle, R. and Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {Advances in Intelligent Systems, Fuzzy Systems, Evolutionary Computation},
    pages = {293--298},
    publisher = {WSEAS Press},
    section = {Proceedings},
    title = {A Parameter Study for Differential Evolution},
    year = {2002}
    }

  • T. Graepel and N. N. Schraudolph, “Stable adaptive momentum for rapid online learning in nonlinear systems," in Artificial neural networks — ICANN 2002, Springer Berlin Heidelberg, 2002, pp. 450-455.
    [BibTeX] [PDF] [DOI]
    @incollection{graepel2002a,
    author = {Thore Graepel and Nicol N. Schraudolph},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2002},
    doi = {10.1007/3-540-46084-5_73},
    pages = {450--455},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Stable Adaptive Momentum for Rapid Online Learning in Nonlinear Systems},
    url = {https://doi.org/10.1007%2F3-540-46084-5_73},
    year = {2002}
    }

  • T. Graepel, “Kernel matrix completion by semidefinite programming," in Artificial neural networks — ICANN 2002, Springer Berlin Heidelberg, 2002, pp. 694-699.
    [BibTeX] [PDF] [DOI]
    @incollection{graepel2002b,
    author = {Thore Graepel},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2002},
    doi = {10.1007/3-540-46084-5_113},
    pages = {694--699},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Kernel Matrix Completion by Semidefinite Programming},
    url = {https://doi.org/10.1007%2F3-540-46084-5_113},
    year = {2002}
    }

  • K. Hermanson, S. Kern, G. Picker, and S. Parneix, “Predictions of external heat transfer for turbine vanes and blades with secondary flowfields," in Proceedings of asme turbo expo, 2002, p. 107.
    [BibTeX] [DOI]
    @inproceedings{hermanson2002a,
    author = {K. Hermanson and S. Kern and G. Picker and S. Parneix},
    booktitle = {Proceedings of ASME Turbo Expo},
    doi = {10.1115/1.1529201},
    journal = {Proceedings of ASME Turbo Expo},
    pages = {107},
    publisher = {{ASME} International},
    section = {Proceedings},
    title = {Predictions of External Heat Transfer for Turbine Vanes and Blades With Secondary Flowfields},
    url = {https://doi.org/10.1115%2F1.1529201},
    volume = {125},
    year = {2002}
    }

  • R. L. Jaffe, J. H. Walther, E. M. Kotsalis, T. Werder, P. Koumoutsakos, and T. Halicioglu, “Molecular dynamics simulations of fullerenes and carbon nanotubes in water," in In 201st meeting of the electrochemical society, 2002.
    [BibTeX]
    @inproceedings{jaffe2002a,
    author = {Jaffe, R. L. and Walther, J. H. and Kotsalis, E. M. and Werder, T. and Koumoutsakos, P. and Halicioglu, T.},
    booktitle = {In 201st Meeting of the Electrochemical Society},
    section = {Proceedings},
    title = {Molecular dynamics simulations of fullerenes and carbon nanotubes in water},
    year = {2002}
    }

  • P. Koumoutsakos, “Nanofluidics of carbon nanotubes: towards the development of nanoscale biosensors," in Proceedings of the fifth world congress on computational mechanics (WCCM V), 2002.
    [BibTeX]
    @inproceedings{koumoutsakos2002a,
    author = {Koumoutsakos, P.},
    booktitle = {Proceedings of the Fifth World Congress on Computational Mechanics {(WCCM V)}},
    section = {Proceedings},
    title = {Nanofluidics of Carbon Nanotubes: Towards the Development of Nanoscale Biosensors},
    year = {2002}
    }

  • G. Morgenthal and J. H. Walther, “An immersed interface method for the vortex-in-cell method," in Fourth international workshop on vortex flow and related numerical methods, 2002, pp. 712-726.
    [BibTeX] [DOI]
    @inproceedings{morgenthal2002a,
    author = {G. Morgenthal and J.H. Walther},
    booktitle = {Fourth International Workshop on Vortex Flow and Related Numerical Methods},
    doi = {10.1016/j.compstruc.2007.01.020},
    journal = {Computers {\&} Structures},
    month = {jun},
    pages = {712--726},
    publisher = {Elsevier {BV}},
    section = {Proceedings},
    title = {An immersed interface method for the Vortex-In-Cell method},
    url = {https://doi.org/10.1016%2Fj.compstruc.2007.01.020},
    volume = {85},
    year = {2002}
    }

  • S. D. Mueller, N. N. Schraudolph, P. Koumoutsakos, and N. Hansen, “Step size adaptation in evolution strategies – two approaches," in Workshop on learning and adaptation in evolutionary computation (GECCO), 2002.
    [BibTeX] [PDF]
    @inproceedings{mueller2002a,
    author = {Mueller, S. D. and Schraudolph, N. N. and Koumoutsakos, P. and Hansen, N.},
    booktitle = {Workshop on Learning and Adaptation in Evolutionary Computation {(GECCO)}},
    section = {Proceedings},
    title = {Step Size Adaptation in Evolution Strategies - Two Approaches},
    year = {2002}
    }

  • S. D. Mueller, N. Hansen, and P. Koumoutsakos, “Increasing the serial and the parallel performance of the CMA-evolution strategy with large populations," in Parallel problem solving from nature — PPSN VII, Springer Berlin Heidelberg, 2002, pp. 422-431.
    [BibTeX] [PDF] [DOI]
    @incollection{mueller2002b,
    author = {Sibylle D. Mueller and Nikolaus Hansen and Petros Koumoutsakos},
    booktitle = {Parallel Problem Solving from Nature {\textemdash} {PPSN} {VII}},
    doi = {10.1007/3-540-45712-7_41},
    pages = {422--431},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Increasing the Serial and the Parallel Performance of the {CMA}-Evolution Strategy with Large Populations},
    url = {https://doi.org/10.1007%2F3-540-45712-7_41},
    year = {2002}
    }

  • S. D. Mueller and P. Koumoutsakos, “Control of micromixers, jets, and turbine cooling using evolution strategies," in Manipulation and control of transverse jets (CISM), 2002.
    [BibTeX] [PDF]
    @inproceedings{mueller2002c,
    author = {Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {Manipulation and Control of Transverse Jets ({CISM})},
    section = {Proceedings},
    title = {Control of Micromixers, Jets, and Turbine Cooling Using Evolution Strategies},
    year = {2002}
    }

  • S. D. Mueller, N. N. Schraudolph, and P. Koumoutsakos, “Step size adaptation in evolution strategies using reinforcement learning," in Proceedings of the ieee world congress on computational intelligence (WCCI), 2002, pp. 151-156.
    [BibTeX] [PDF]
    @inproceedings{mueller2002d,
    author = {Mueller, S. D. and Schraudolph, N. N. and Koumoutsakos, P.},
    booktitle = {Proceedings of the IEEE World Congress on Computational Intelligence {(WCCI)}},
    pages = {151--156},
    section = {Proceedings},
    title = {Step Size Adaptation in Evolution Strategies using Reinforcement Learning},
    year = {2002}
    }

  • I. F. Sbalzarini, A. Mezzacasa, A. Helenius, and P. Koumoutsakos, “Organelle shape has an influencer on fluorescence recovery results," in Mol. biol. of the cell, 2002.
    [BibTeX]
    @inproceedings{sbalzarini2002a,
    author = {Sbalzarini, I. F. and Mezzacasa, A. and Helenius, A. and Koumoutsakos, P.},
    booktitle = {Mol. Biol. of the Cell},
    section = {Proceedings},
    title = {Organelle shape has an influencer on fluorescence recovery results},
    volume = {13},
    year = {2002}
    }

  • I. F. Sbalzarini, J. Theriot, and P. Koumoutsakos, “Machine learning for biological trajectory classification applications," in Proceedings of the CTR summer program, 2002.
    [BibTeX] [PDF]
    @inproceedings{sbalzarini2002b,
    author = {Sbalzarini, I. F. and Theriot, J. and Koumoutsakos, P.},
    booktitle = {Proceedings of the {CTR} summer program},
    organization = {Center for Turbulence Research},
    section = {Proceedings},
    title = {Machine Learning for Biological Trajectory Classification Applications},
    year = {2002}
    }

  • N. N. Schraudolph and T. Graepel, “Conjugate directions for stochastic gradient descent," in Artificial neural networks — ICANN 2002, Springer Berlin Heidelberg, 2002, pp. 1351-1356.
    [BibTeX] [PDF] [DOI]
    @incollection{schraudolph2002b,
    author = {Nicol N. Schraudolph and Thore Graepel},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2002},
    doi = {10.1007/3-540-46084-5_218},
    pages = {1351--1356},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Conjugate Directions for Stochastic Gradient Descent},
    url = {https://doi.org/10.1007%2F3-540-46084-5_218},
    year = {2002}
    }

  • N. N. Schraudolph and T. Graepel, “Towards stochastic conjugate gradient methods," in Proceedings of the 9th international conference on neural information processing, 2002. ICONIP ’02., 2002.
    [BibTeX] [DOI]
    @inproceedings{schraudolph2002c,
    author = {N.N. Schraudolph and T. Graepel},
    booktitle = {Proceedings of the 9th International Conference on Neural Information Processing, 2002. {ICONIP} {\textquotesingle}02.},
    doi = {10.1109/iconip.2002.1198180},
    publisher = {Nanyang Technol. Univ},
    section = {Proceedings},
    title = {Towards stochastic conjugate gradient methods},
    url = {https://doi.org/10.1109%2Ficonip.2002.1198180},
    year = {2002}
    }

  • J. H. Walther, R. L. Jaffe, T. Werder, T. Halicioglu, and P. Koumoutsakos, “On the boundary condition for water at a hydrophobic surface," in In proceedings of the summer program, 2002, pp. 317-329.
    [BibTeX] [PDF]
    @inproceedings{walther2002b,
    author = {Walther, J. H. and Jaffe, R. L. and Werder, T. and Halicioglu, T. and Koumoutsakos, P.},
    booktitle = {In Proceedings of the Summer Program},
    organization = {Center for Turbulence Research},
    pages = {317--329},
    section = {Proceedings},
    title = {On the boundary condition for water at a hydrophobic surface},
    year = {2002}
    }

  • J. H. Walther, S. Kern, and P. Koumoutsakos, “Simulation of particulate flow using particle methods a P3M algorithm for charged particulates," in Sedimentation and sediment transport, Springer Netherlands, 2002, pp. 165-168.
    [BibTeX] [PDF] [DOI]
    @incollection{walther2002c,
    author = {J. H. Walther and S. Kern and P. Koumoutsakos},
    booktitle = {Sedimentation and Sediment Transport},
    doi = {10.1007/978-94-017-0347-5_26},
    pages = {165--168},
    publisher = {Springer Netherlands},
    section = {Proceedings},
    title = {Simulation of Particulate Flow Using Particle Methods a {P3M} Algorithm for Charged Particulates},
    url = {https://doi.org/10.1007%2F978-94-017-0347-5_26},
    year = {2002}
    }

  • T. Werder, J. H. Walther, and P. Koumoutsakos, “Hydrodynamics of carbon nanotubes – contact angle and hydrophobic hydration," in Technical proceedings of the second international conference on computational nanoscience and nanotechnology (ICCN), 2002.
    [BibTeX] [PDF]
    @inproceedings{werder2002a,
    author = {Werder, T. and Walther, J. H. and Koumoutsakos, P.},
    booktitle = {Technical Proceedings of the Second International Conference on Computational Nanoscience and Nanotechnology {(ICCN)}},
    section = {Proceedings},
    title = {Hydrodynamics of Carbon Nanotubes - Contact Angle and Hydrophobic Hydration},
    year = {2002}
    }

2001

  • D. Bueche, P. Stoll, and P. Koumoutsakos, “An evolutionary algorithm for multi-objective optimization of combustion processes," in CTR annual research briefs, 2001.
    [BibTeX]
    @inproceedings{bueche2001a,
    author = {Bueche, D. and Stoll, P. and Koumoutsakos, P.},
    booktitle = {{CTR} Annual Research Briefs},
    section = {Proceedings},
    title = {An evolutionary algorithm for multi-objective optimization of combustion processes},
    year = {2001}
    }

  • D. Bueche, P. Stoll, and P. Koumoutsakos, “Multi-objective optimization of combustion processes," in Cism, 2001.
    [BibTeX]
    @inproceedings{bueche2001b,
    author = {Bueche, D. and Stoll, P. and Koumoutsakos, P.},
    booktitle = {CISM},
    section = {Proceedings},
    title = {Multi-Objective Optimization of Combustion Processes},
    year = {2001}
    }

  • D. Bueche and R. Dornberger, “New evolutionary algorithm for multi-objective optimization and the application to engineering design problems," in Proceedings of the fourth world congress of structural and multidisciplinary optimization, 2001.
    [BibTeX] [PDF]
    @inproceedings{bueche2001c,
    author = {Bueche, D. and Dornberger, R.},
    booktitle = {Proceedings of the Fourth World Congress of Structural and Multidisciplinary Optimization},
    section = {Proceedings},
    title = {New Evolutionary Algorithm for Multi-Objective Optimization and the Application to Engineering Design Problems},
    year = {2001}
    }

  • M. Klapper-Rybicka, N. N. Schraudolph, and J. Schmidhuber, “Unsupervised learning in LSTM recurrent neural networks," in Artificial neural networks — ICANN 2001, Springer Berlin Heidelberg, 2001, pp. 684-691.
    [BibTeX] [PDF] [DOI]
    @incollection{klapperrybicka2001b,
    author = {Magdalena Klapper-Rybicka and Nicol N. Schraudolph and J{\"u}rgen Schmidhuber},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2001},
    doi = {10.1007/3-540-44668-0_95},
    pages = {684--691},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Unsupervised Learning in {LSTM} Recurrent Neural Networks},
    url = {https://doi.org/10.1007%2F3-540-44668-0_95},
    year = {2001}
    }

  • E. M. Kotsalis, R. L. Jaffe, J. H. Walther, T. Werder, and P. Koumoutsakos, “Buckyballs in water: structural characteristics and energetics," in CTR annual research briefs, 2001, pp. 283-291.
    [BibTeX] [PDF]
    @inproceedings{kotsalis2001a,
    author = {Kotsalis, E. M. and Jaffe, R. L. and Walther, J. H. and Werder, T. and Koumoutsakos, P.},
    booktitle = {{CTR} Annual Research Briefs},
    pages = {283--291},
    section = {Proceedings},
    title = {Buckyballs in Water: Structural Characteristics and Energetics},
    year = {2001}
    }

  • P. Koumoutsakos, T. Werder, J. H. Walther, R. L. Jaffe, and T. Halicioglu, “Carbon nanotubes in water: MD simulations of internal & external flow," in Ninth foresight conference on molecular nanotechnology, 2001.
    [BibTeX] [PDF]
    @inproceedings{koumoutsakos2001b,
    author = {Koumoutsakos, P. and Werder, T. and Walther, J. H. and Jaffe, R. L. and Halicioglu, T.},
    booktitle = {Ninth Foresight Conference on Molecular Nanotechnology},
    section = {Proceedings},
    title = {Carbon Nanotubes in Water: {MD} Simulations of Internal \& External Flow},
    year = {2001}
    }

  • M. Milano, J. Schmidhuber, and P. Koumoutsakos, “An evolution strategy using self-organizing maps," in International conference on artificial neural networks (ICANN), 2001.
    [BibTeX]
    @inproceedings{milano2001a,
    author = {Milano, M. and Schmidhuber, J. and Koumoutsakos, P.},
    booktitle = {International Conference on Artificial Neural Networks {(ICANN)}},
    section = {Proceedings},
    title = {An Evolution Strategy using Self-Organizing Maps},
    year = {2001}
    }

  • M. Milano, J. Schmidhuber, and P. Koumoutsakos, “Active learning with adaptive grids," in Artificial neural networks — ICANN 2001, Springer Berlin Heidelberg, 2001, pp. 436-442.
    [BibTeX] [PDF] [DOI]
    @incollection{milano2001b,
    author = {Michele Milano and J{\"u}rgen Schmidhuber and Petros Koumoutsakos},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2001},
    doi = {10.1007/3-540-44668-0_61},
    pages = {436--442},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Active Learning with Adaptive Grids},
    url = {https://doi.org/10.1007%2F3-540-44668-0_61},
    year = {2001}
    }

  • S. D. Mueller and P. Koumoutsakos, “Mixing optimization with evolution strategies," in Eurogen, 2001.
    [BibTeX] [PDF]
    @inproceedings{mueller2001b,
    author = {Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {EUROGEN},
    section = {Proceedings},
    title = {Mixing Optimization with Evolution Strategies},
    year = {2001}
    }

  • S. D. Mueller, I. F. Sbalzarini, J. H. Walther, and P. Koumoutsakos, “Evolution strategies for the optimization of microdevices," in Proceedings of the congress on evolutionary computation (CEC), 2001, pp. 302-309.
    [BibTeX] [PDF]
    @inproceedings{mueller2001c,
    author = {Mueller, S. D. and Sbalzarini, I. F. and Walther, J. H. and Koumoutsakos, P.},
    booktitle = {Proceedings of the Congress on Evolutionary Computation {(CEC)}},
    pages = {302--309},
    section = {Proceedings},
    title = {Evolution Strategies for the Optimization of Microdevices},
    year = {2001}
    }

  • M. Papanikolaou, “Respace – a virtual environment for rethinking about space," in Caadria, 2001.
    [BibTeX]
    @inproceedings{papanikolaou2001a,
    author = {Papanikolaou, M.},
    booktitle = {CAADRIA},
    section = {Proceedings},
    title = {ReSpace - a virtual environment for rethinking about space},
    year = {2001}
    }

  • I. F. Sbalzarini, S. D. Mueller, P. Koumoutsakos, and G. -H. Cottet, “Evolution strategies for computational and experimental fluid dynamics applications," in Proceedings of the genetic and evolutionary computation conference (GECCO), 2001.
    [BibTeX] [PDF]
    @inproceedings{sbalzarini2001a,
    author = {Sbalzarini, I. F. and Mueller, S. D. and Koumoutsakos, P. and Cottet, G.-H.},
    booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference {(GECCO)}},
    publisher = {Morgan Kaufmann},
    section = {Proceedings},
    title = {Evolution Strategies for Computational and Experimental Fluid Dynamics Applications},
    year = {2001}
    }

  • I. F. Sbalzarini, S. Müller, and P. Koumoutsakos, “Microchannel optimization using multiobjective evolution strategies," in Lecture notes in computer science, Springer Berlin Heidelberg, 2001, pp. 516-530.
    [BibTeX] [PDF] [DOI]
    @incollection{sbalzarini2001b,
    author = {Ivo F. Sbalzarini and Sibylle M{\"u}ller and Petros Koumoutsakos},
    booktitle = {Lecture Notes in Computer Science},
    doi = {10.1007/3-540-44719-9_36},
    pages = {516--530},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Microchannel Optimization Using Multiobjective Evolution Strategies},
    url = {https://doi.org/10.1007%2F3-540-44719-9_36},
    year = {2001}
    }

  • N. N. Schraudolph, “Fast curvature matrix-vector products," in Artificial neural networks — ICANN 2001, Springer Berlin Heidelberg, 2001, pp. 19-26.
    [BibTeX] [PDF] [DOI]
    @incollection{schraudolph2001a,
    author = {Nicol N. Schraudolph},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2001},
    doi = {10.1007/3-540-44668-0_4},
    pages = {19--26},
    publisher = {Springer Berlin Heidelberg},
    section = {Proceedings},
    title = {Fast Curvature Matrix-Vector Products},
    url = {https://doi.org/10.1007%2F3-540-44668-0_4},
    year = {2001}
    }

2000

  • G. -H. Cottet, I. F. Sbalzarini, S. D. Mueller, and P. Koumoutsakos, “Optimization of trailing vortex destruction by evolution strategies," in CTR proceedings of the 2000 summer program, 2000.
    [BibTeX] [PDF]
    @inproceedings{cottet2000c,
    author = {Cottet, G.-H. and Sbalzarini, I. F. and Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {{CTR} Proceedings of the 2000 Summer Program},
    section = {Proceedings},
    title = {Optimization of trailing vortex destruction by evolution strategies},
    year = {2000}
    }

  • R. Dornberger, P. Stoll, D. Bueche, and A. Neu, “Multidisciplinary turbomachinery blade design optimization," in 38th aerospace sciences meeting and exhibit, 2000.
    [BibTeX] [PDF] [DOI]
    @inproceedings{dornberger2000a,
    author = {Rolf Dornberger and Peter Stoll and Dirk Bueche and Alexander Neu},
    booktitle = {38th Aerospace Sciences Meeting and Exhibit},
    doi = {10.2514/6.2000-838},
    month = {jan},
    publisher = {American Institute of Aeronautics and Astronautics},
    section = {Proceedings},
    title = {Multidisciplinary turbomachinery blade design optimization},
    url = {https://doi.org/10.2514%2F6.2000-838},
    year = {2000}
    }

  • R. Dornberger, D. Bueche, and P. Stoll, “Multidisciplinary optimization in turbomachinery design," in Eccomas CMNM, 2000.
    [BibTeX] [PDF]
    @inproceedings{dornberger2000b,
    author = {Dornberger, R. and Bueche, D. and Stoll, P.},
    booktitle = {Eccomas {CMNM}},
    section = {Proceedings},
    title = {Multidisciplinary Optimization in Turbomachinery Design},
    volume = {102},
    year = {2000}
    }

  • L. Glielmo, S. Santini, and M. Milano, “Three-way catalytic converter modelling: neural networks and genetic algorithms for the reaction kinetics submodel," in SAE technical paper series, 2000.
    [BibTeX] [DOI]
    @inproceedings{glielmo2000b,
    author = {Luigi Glielmo and Stefania Santini and Michele Milano},
    booktitle = {{SAE} Technical Paper Series},
    doi = {10.4271/2000-01-0212},
    month = {mar},
    publisher = {{SAE} International},
    section = {Proceedings},
    title = {Three-way Catalytic Converter Modelling: Neural Networks and Genetic Algorithms for the Reaction Kinetics Submodel},
    url = {https://doi.org/10.4271%2F2000-01-0212},
    year = {2000}
    }

  • P. Koumoutsakos, K. Shariff, A. Wray, and A. Pohorille, “Particle methods : from vortex dynamics to biology," in Computational aerosciences, 2000.
    [BibTeX]
    @inproceedings{koumoutsakos2000a,
    author = {Koumoutsakos, P. and Shariff, K. and Wray, A. and Pohorille, A.},
    booktitle = {Computational Aerosciences},
    section = {Proceedings},
    title = {Particle Methods : From Vortex Dynamics to Biology},
    year = {2000}
    }

  • M. Milano, P. Koumoutsakos, X. Giannakopoulos, and J. Schmidhuber, “Evolutionary computation," in Proceedings of the 2000 congress, 2000, pp. 212-218.
    [BibTeX] [PDF]
    @inproceedings{milano2000a,
    author = {Milano, M. and Koumoutsakos, P. and Giannakopoulos, X. and Schmidhuber, J.},
    booktitle = {Proceedings of the 2000 Congress},
    pages = {212--218},
    section = {Proceedings},
    title = {Evolutionary Computation},
    volume = {1},
    year = {2000}
    }

  • M. Milano and P. Koumoutsakos, “A clustering genetic algorithm for actuator optimization in flow control," in Proceedings of 2nd NASA/DoD workshop on evovable hardware, 2000, pp. 263-269.
    [BibTeX] [PDF]
    @inproceedings{milano2000b,
    author = {Milano, M. and Koumoutsakos, P.},
    booktitle = {Proceedings of 2nd {NASA/DoD} Workshop on Evovable Hardware},
    pages = {263--269},
    section = {Proceedings},
    title = {A clustering genetic algorithm for actuator optimization in flow control},
    year = {2000}
    }

  • M. Milano, P. Koumoutsakos, X. Giannakopoulos, and J. Schmidhuber, “Evolving strategies for active flow control," in Proceedings of the 2000 congress on evolutionary computation. CEC00 (cat. no.00th8512), 2000.
    [BibTeX] [DOI]
    @inproceedings{milano2000c,
    author = {M. Milano and P. Koumoutsakos and X. Giannakopoulos and J. Schmidhuber},
    booktitle = {Proceedings of the 2000 Congress on Evolutionary Computation. {CEC}00 (Cat. No.00TH8512)},
    doi = {10.1109/cec.2000.870297},
    publisher = {IEEE},
    section = {Proceedings},
    title = {Evolving strategies for active flow control},
    url = {https://doi.org/10.1109%2Fcec.2000.870297},
    year = {2000}
    }

  • S. D. Mueller, I. F. Sbalzarini, I. Mezic, J. H. Walther, and P. Koumoutsakos, “Evolutionary optimization of mixing microdevices," in Nanotech, 2000.
    [BibTeX] [PDF]
    @inproceedings{mueller2000a,
    author = {Mueller, S. D. and Sbalzarini, I. F. and Mezic, I. and Walther, J. H. and Koumoutsakos, P.},
    booktitle = {NanoTech},
    section = {Proceedings},
    title = {Evolutionary Optimization of Mixing Microdevices},
    year = {2000}
    }

  • S. D. Mueller, S. Airaghi, J. Marchetto, and P. Koumoutsakos, “Optimization algorithms based on a model of bacterial chemotaxis," in Sixth international conference on simulation of adaptive behavior: from animals to animats (SAB), 2000.
    [BibTeX] [PDF]
    @inproceedings{mueller2000b,
    author = {Mueller, S. D. and Airaghi, S. and Marchetto, J. and Koumoutsakos, P.},
    booktitle = {Sixth International Conference on Simulation of Adaptive Behavior: From Animals to Animats {(SAB)}},
    note = {Proceedings Supplement},
    publisher = {International Society for Adaptive Behavior},
    section = {Proceedings},
    title = {Optimization Algorithms based on a Model of Bacterial Chemotaxis},
    year = {2000}
    }

  • F. Noca, M. Hoenk, B. Hunt, P. Koumoutsakos, J. Walther, and T. Werder, “Bio-inspired acoustic sensors based on artificial stereocilia," The journal of the acoustical society of america, vol. 108, iss. 5, pp. 2494-2494, 2000.
    [BibTeX] [DOI]
    @article{noca2000b,
    author = {Flavio Noca and Michael Hoenk and Brian Hunt and Petros Koumoutsakos and Jens Walther and Thomas Werder},
    doi = {10.1121/1.4743209},
    journal = {The Journal of the Acoustical Society of America},
    month = {nov},
    number = {5},
    pages = {2494--2494},
    publisher = {Acoustical Society of America ({ASA})},
    section = {Proceedings},
    title = {Bio-inspired acoustic sensors based on artificial stereocilia},
    url = {https://doi.org/10.1121%2F1.4743209},
    volume = {108},
    year = {2000}
    }

  • J. T. Sagredo, J. H. Walther, and P. Koumoutsakos, “Simulation of particulate flows using vortex methods," in Ercoftac conference on dynamics of particle-laden flows, 2000.
    [BibTeX]
    @inproceedings{sagredo2000a,
    author = {Sagredo, J. T. and Walther, J. H. and Koumoutsakos, P.},
    booktitle = {Ercoftac Conference on Dynamics of Particle-Laden Flows},
    section = {Proceedings},
    title = {Simulation of particulate flows using vortex methods},
    year = {2000}
    }

  • I. F. Sbalzarini, L. K. Su, and P. Koumoutsakos, “Evolutionary optimization for flow experiments," in CTR annual research briefs, 2000.
    [BibTeX] [PDF]
    @inproceedings{sbalzarini2000a,
    author = {Sbalzarini, I. F. and Su, L. K. and Koumoutsakos, P.},
    booktitle = {{CTR} Annual Research Briefs},
    section = {Proceedings},
    title = {Evolutionary Optimization for Flow Experiments},
    year = {2000}
    }

  • I. F. Sbalzarini, S. D. Mueller, and P. Koumoutsakos, “Multiobjective optimization using evolutionary algorithms," in Proceedings of the CTR summer program, 2000.
    [BibTeX] [PDF]
    @inproceedings{sbalzarini2000b,
    author = {Sbalzarini, I. F. and Mueller, S. D. and Koumoutsakos, P.},
    booktitle = {Proceedings of the {CTR} summer program},
    section = {Proceedings},
    title = {Multiobjective Optimization using Evolutionary Algorithms},
    year = {2000}
    }

  • J. H. Walther, R. L. Jaffe, T. Halicioglu, and P. Koumoutsakos, “Molecular dynamics simulations of carbon nanotubes in water," in CTR proceedings of the 2000 summer program, 2000.
    [BibTeX] [PDF]
    @inproceedings{walther2000b,
    author = {Walther, J. H. and Jaffe, R. L. and Halicioglu, T. and Koumoutsakos, P.},
    booktitle = {{CTR} Proceedings of the 2000 Summer Program},
    section = {Proceedings},
    title = {Molecular dynamics simulations of carbon nanotubes in water},
    year = {2000}
    }

  • J. H. Walther, R. L. Jaffe, T. Halicioglu, and P. Koumoutsakos, “Computational studies of carbon nanotubes in water," in Annual meeting of the division of fluid dynamics (APS), 2000.
    [BibTeX]
    @inproceedings{walther2000c,
    author = {Walther, J. H. and Jaffe, R. L. and Halicioglu, T. and Koumoutsakos, P.},
    booktitle = {Annual Meeting of the Division of Fluid Dynamics {(APS)}},
    section = {Proceedings},
    title = {Computational studies of carbon nanotubes in water},
    year = {2000}
    }

  • J. H. Walther and P. Koumoutsakos, “A computational study of flows in carbon nanotubes," in Nanotech, 2000.
    [BibTeX]
    @inproceedings{walther2000d,
    author = {Walther, J. H. and Koumoutsakos, P.},
    booktitle = {NanoTech},
    section = {Proceedings},
    title = {A Computational study of flows in carbon nanotubes},
    year = {2000}
    }

1999

  • L. Glielmo, S. Santini, M. Milano, and G. Serra, “Three-way catalytic converter modelling: a machine learning approach for the reaction kinetics," in 1999 IEEE/ASME international conference on advanced intelligent mechatronics (cat. no.99th8399), 1999.
    [BibTeX] [DOI]
    @inproceedings{glielmo1999a,
    author = {L. Glielmo and S. Santini and M. Milano and G. Serra},
    booktitle = {1999 {IEEE}/{ASME} International Conference on Advanced Intelligent Mechatronics (Cat. No.99TH8399)},
    doi = {10.1109/aim.1999.803173},
    publisher = {IEEE},
    section = {Proceedings},
    title = {Three-way catalytic converter modelling: a machine learning approach for the reaction kinetics},
    url = {https://doi.org/10.1109%2Faim.1999.803173},
    year = {1999}
    }

  • P. Koumoutsakos and P. Moin, “Algorithms for shear flow control and optimization," in Proceedings of the 38th IEEE conference on decision and control (cat. no.99ch36304), 1999.
    [BibTeX] [PDF] [DOI]
    @inproceedings{koumoutsakos1999b,
    author = {P. Koumoutsakos and P. Moin},
    booktitle = {Proceedings of the 38th {IEEE} Conference on Decision and Control (Cat. No.99CH36304)},
    doi = {10.1109/cdc.1999.831364},
    publisher = {IEEE},
    section = {Proceedings},
    title = {Algorithms for shear flow control and optimization},
    url = {https://doi.org/10.1109%2Fcdc.1999.831364},
    year = {1999}
    }

  • P. Koumoutsakos and P. Moin, “Machine learning algorithms for flow optimization," in IEEE conf. on decision and control, 1999.
    [BibTeX]
    @inproceedings{koumoutsakos1999c,
    author = {Koumoutsakos, P. and Moin, P.},
    booktitle = {{IEEE} Conf. on Decision and Control},
    section = {Proceedings},
    title = {Machine Learning Algorithms for Flow Optimization},
    year = {1999}
    }

  • S. D. Mueller, M. Milano, and P. Koumoutsakos, “Application of machine learning algorithms to flow modeling and optimization," in CTR annual research briefs, 1999.
    [BibTeX] [PDF]
    @inproceedings{mueller1999a,
    author = {Mueller, S. D. and Milano, M. and Koumoutsakos, P.},
    booktitle = {{CTR} Annual Research Briefs},
    section = {Proceedings},
    title = {Application of machine learning algorithms to flow modeling and optimization},
    year = {1999}
    }

  • M. Papanikolaou and B. Tuncer, “The fake space experience – exploring new spaces," in Ecaade, 1999, pp. 395-402.
    [BibTeX]
    @inproceedings{papanikolaou1999a,
    author = {Papanikolaou, M. and Tuncer, B.},
    booktitle = {ECAADE},
    pages = {395--402},
    section = {Proceedings},
    title = {The Fake Space Experience - Exploring New Spaces},
    year = {1999}
    }

  • J. H. Walther, J. T. Sagredo, and P. Koumoutsakos, “Simulation of particulate flow using vortex methods," in The first international conference on vortex methods, 1999.
    [BibTeX]
    @inproceedings{walther1999c,
    author = {Walther, J. H. and Sagredo, J. T. and Koumoutsakos, P.},
    booktitle = {The First International Conference on Vortex Methods},
    section = {Proceedings},
    title = {Simulation of Particulate Flow Using Vortex Methods},
    year = {1999}
    }

1998

  • P. Koumoutsakos, “Feedback control algorithms for flow control," in IUTAM conf. flow control, 1998.
    [BibTeX]
    @inproceedings{koumoutsakos1998a,
    author = {Koumoutsakos, P.},
    booktitle = {{IUTAM} Conf. Flow Control},
    section = {Proceedings},
    title = {Feedback Control Algorithms for Flow Control},
    year = {1998}
    }

  • P. Koumoutsakos, “Particle methods for the simulation of multiscale phenomena," in CTR annual research briefs, 1998.
    [BibTeX] [PDF]
    @inproceedings{koumoutsakos1998b,
    author = {Koumoutsakos, P.},
    booktitle = {{CTR} Annual Research Briefs},
    section = {Proceedings},
    title = {Particle methods for the simulation of multiscale phenomena},
    year = {1998}
    }

  • P. Koumoutsakos, J. Freund, and D. Parekh, “Evolution strategies for the optimization of jet flow parameters," in CTR summer research briefs, 1998.
    [BibTeX] [PDF]
    @inproceedings{koumoutsakos1998c,
    author = {Koumoutsakos, P. and Freund, J. and Parekh, D.},
    booktitle = {{CTR} Summer Research Briefs},
    section = {Proceedings},
    title = {Evolution strategies for the optimization of jet flow parameters},
    year = {1998}
    }

  • A. Larsen and J. H. Walther, “A two dimensional discrete vortex method for bridge aerodynamics applications," in Eccomas, 1998.
    [BibTeX] [PDF]
    @inproceedings{larsen1998b,
    author = {Larsen, A. and Walther, J. H.},
    booktitle = {ECCOMAS},
    section = {Proceedings},
    title = {A two dimensional discrete vortex method for bridge aerodynamics applications},
    year = {1998}
    }

  • J. H. Walther, “Discrete vortex methods in bridge aerodynamics and prospects for parallel computing techniques," in International symposium on advances in bridge aerodynamics, 1998.
    [BibTeX] [PDF]
    @inproceedings{walther1998a,
    author = {Walther, J. H.},
    booktitle = {International Symposium on Advances in Bridge Aerodynamics},
    section = {Proceedings},
    title = {Discrete vortex methods in bridge aerodynamics and prospects for parallel computing techniques},
    year = {1998}
    }

1997

  • G. Abate, L. Glielmo, P. Rinaldi, S. Santini, M. Milano, and G. Serra, “Numerical simulation and analysis of the dynamic behavior of three way catalytic converters," in International conference on combustion, 1997.
    [BibTeX]
    @inproceedings{abate1997a,
    author = {Abate, G. and Glielmo, L. and Rinaldi, P. and Santini, S. and Milano, M. and Serra, G.},
    booktitle = {International Conference on Combustion},
    section = {Proceedings},
    title = {Numerical Simulation and Analysis of the Dynamic Behavior of Three Way Catalytic Converters},
    year = {1997}
    }

  • P. Koumoutsakos, T. Bewley, E. Hammond, P. Moin, P. Koumoutsakos, T. Bewley, E. Hammond, and P. Moin, “Feedback algorithms for turbulence control – some recent developments," in 28th fluid dynamics conference, 1997.
    [BibTeX] [DOI]
    @inproceedings{koumoutsakos1997c,
    author = {Petros Koumoutsakos and Thomas Bewley and Edward Hammond and Parviz Moin and Petros Koumoutsakos and Thomas Bewley and Edward Hammond and Parviz Moin},
    booktitle = {28th Fluid Dynamics Conference},
    doi = {10.2514/6.1997-2008},
    month = {jun},
    publisher = {American Institute of Aeronautics and Astronautics},
    section = {Proceedings},
    title = {Feedback algorithms for turbulence control - Some recent developments},
    url = {https://doi.org/10.2514%2F6.1997-2008},
    year = {1997}
    }

  • M. Milano, P. Marino, and F. Vasca, “Robust neural network observer for induction motor control," in IEEE power electronics specialists conference (PESC), 1997.
    [BibTeX]
    @inproceedings{milano1997c,
    author = {Milano, M. and Marino, P. and Vasca, F.},
    booktitle = {{IEEE} Power Electronics Specialists Conference {(PESC)}},
    section = {Proceedings},
    title = {Robust Neural Network Observer for Induction Motor Control},
    year = {1997}
    }

  • J. H. Walther and A. Larsen, “Analytical and discrete vortex models for an oscillating flat plate with trailing edge flap," in Eighth u.s. national conference on wind engineering, 1997.
    [BibTeX] [PDF]
    @inproceedings{walther1997b,
    author = {Walther, J. H. and Larsen, A.},
    booktitle = {Eighth U.S. National Conference on Wind Engineering},
    section = {Proceedings},
    title = {Analytical and discrete vortex models for an oscillating flat plate with trailing edge flap},
    year = {1997}
    }

Books

  • Control of fluid flow, P. Koumoutsakos and I. Mezic, Eds., Springer-Verlag, 2006.
    [BibTeX] [PDF] [DOI]
    @book{koumoutsakos2006b,
    doi = {10.1007/978-3-540-36085-8},
    editor = {Koumoutsakos, P. and Mezic, I.},
    publisher = {Springer-Verlag},
    section = {Edited Volumes},
    series = {Lecture Notes in Control and Information},
    title = {Control of Fluid Flow},
    year = {2006}
    }

  • Multiscale modelling and simulation, S. Attinger and P. D. Koumoutsakos, Eds., Springer, 2004.
    [BibTeX] [PDF]
    @book{attinger2004a,
    editor = {Attinger, Sabine and Koumoutsakos, Petros D},
    publisher = {Springer},
    section = {Edited Volumes},
    title = {Multiscale modelling and simulation},
    year = {2004}
    }

  • A. Gyr, P. Koumoutsakos, and U. Burr, Science and art symposium 2000: 3rd international conference on flow interaction of science and art with exhibition/lectures on interaction of science & art, 28.2—3.3 2000 at the eth zurich, Springer Science & Business Media, 2000.
    [BibTeX] [PDF]
    @book{gyr2000a,
    author = {Gyr, Albert and Koumoutsakos, Petros and Burr, Ulrich},
    publisher = {Springer Science \& Business Media},
    section = {Edited Volumes},
    title = {Science and Art Symposium 2000: 3rd International Conference on Flow Interaction of Science and Art with Exhibition/Lectures on Interaction of Science \& Art, 28.2{\textemdash}3.3 2000 at the ETH Zurich},
    year = {2000}
    }

  • G. Cottet and P. D. Koumoutsakos, Vortex methods, Cambridge University Press, 2000.
    [BibTeX] [PDF] [DOI]
    @book{cottet2000b,
    author = {Georges-Henri Cottet and Petros D. Koumoutsakos},
    doi = {10.1017/cbo9780511526442},
    publisher = {Cambridge University Press},
    section = {Monograph},
    title = {Vortex Methods},
    url = {https://doi.org/10.1017%2Fcbo9780511526442},
    year = {2000}
    }

In Collections

  • A. Leonard and P. Koumoutsakos, “High resolution vortex simulation of bluff body flows," in Computational wind engineering 1, Elsevier, 1993, pp. 315-325.
    [BibTeX] [PDF] [DOI]
    @incollection{leonard1993a,
    author = {A. Leonard and P. Koumoutsakos},
    booktitle = {Computational Wind Engineering 1},
    doi = {10.1016/b978-0-444-81688-7.50035-8},
    pages = {315--325},
    publisher = {Elsevier},
    section = {Journals},
    title = {High Resolution Vortex Simulation of Bluff Body Flows},
    url = {https://doi.org/10.1016%2Fb978-0-444-81688-7.50035-8},
    year = {1993}
    }

  • M. Bergdorf, F. Milde, and P. Koumoutsakos, “Particle simulations of growth: application to tumorigenesis," in Modeling tumor vasculature, Springer New York, 2011, pp. 261-303.
    [BibTeX] [PDF] [DOI]
    @incollection{bergdorf2011a,
    author = {Michael Bergdorf and Florian Milde and Petros Koumoutsakos},
    booktitle = {Modeling Tumor Vasculature},
    doi = {10.1007/978-1-4614-0052-3_11},
    month = {nov},
    pages = {261--303},
    publisher = {Springer New York},
    section = {Book Chapters},
    title = {Particle Simulations of Growth: Application to Tumorigenesis},
    url = {https://doi.org/10.1007%2F978-1-4614-0052-3_11},
    year = {2011}
    }

  • F. Milde, M. Bergdorf, and P. Koumoutsakos, “Particle simulations of growth: application to angiogenesis," in Modeling tumor vasculature, Springer New York, 2011, pp. 305-334.
    [BibTeX] [PDF] [DOI]
    @incollection{milde2011a,
    author = {Florian Milde and Michael Bergdorf and Petros Koumoutsakos},
    booktitle = {Modeling Tumor Vasculature},
    doi = {10.1007/978-1-4614-0052-3_12},
    month = {nov},
    pages = {305--334},
    publisher = {Springer New York},
    section = {Book Chapters},
    title = {Particle Simulations of Growth: Application to Angiogenesis},
    url = {https://doi.org/10.1007%2F978-1-4614-0052-3_12},
    year = {2011}
    }

  • M. Bergdorf, F. Milde, and P. Koumoutsakos, “Continuum models of mesenchymal cell migration and sprouting angiogenesis," in Multiscale cancer modeling, {CRC} Press, 2010, pp. 213-235.
    [BibTeX] [PDF] [DOI]
    @incollection{bergdorf2010a,
    author = {Michael Bergdorf and Florian Milde and Petros Koumoutsakos},
    booktitle = {Multiscale Cancer Modeling},
    doi = {10.1201/b10407-12},
    month = {dec},
    pages = {213--235},
    publisher = {{CRC} Press},
    section = {Book Chapters},
    title = {Continuum Models of Mesenchymal Cell Migration and Sprouting Angiogenesis},
    url = {https://doi.org/10.1201%2Fb10407-12},
    year = {2010}
    }

2018

  • J. C. Ong, K. M. Pang, J. H. Walther, J. Ho, and H. K. Ng, “Evaluation of a lagrangian soot tracking method for the prediction of primary soot particle size under engine-like conditions," Journal of aerosol science, vol. 115, pp. 70-95, 2018.
    [BibTeX] [PDF] [DOI]
    @article{ong2018a,
    author = {Jiun Cai Ong and Kar Mun Pang and Jens Honore Walther and Jee-Hou Ho and Hoon Kiat Ng},
    doi = {10.1016/j.jaerosci.2017.10.013},
    journal = {Journal of Aerosol Science},
    month = {jan},
    pages = {70--95},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Evaluation of a Lagrangian Soot Tracking Method for the prediction of primary soot particle size under engine-like conditions},
    url = {https://doi.org/10.1016%2Fj.jaerosci.2017.10.013},
    volume = {115},
    year = {2018}
    }

  • M. L. Szanyi, C. S. Hemmingsen, W. Yan, J. H. Walther, and S. L. Glimberg, “Near-wellbore modeling of a horizontal well with computational fluid dynamics," Journal of petroleum science and engineering, vol. 160, pp. 119-128, 2018.
    [BibTeX] [PDF] [DOI]
    @article{szanyi2018a,
    author = {M{\'{a}}rton L. Szanyi and Casper S. Hemmingsen and Wei Yan and Jens H. Walther and Stefan L. Glimberg},
    doi = {10.1016/j.petrol.2017.10.011},
    journal = {Journal of Petroleum Science and Engineering},
    month = {jan},
    pages = {119--128},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Near-wellbore modeling of a horizontal well with Computational Fluid Dynamics},
    url = {https://doi.org/10.1016%2Fj.petrol.2017.10.011},
    volume = {160},
    year = {2018}
    }

2017

  • C. K. Christiansen, J. H. Walther, P. Klit, and A. Vølund, “Investigation of journal orbit and flow pattern in a dynamically loaded journal bearing," Tribology international, vol. 114, pp. 450-457, 2017.
    [BibTeX] [PDF] [DOI]
    @article{christiansen2017a,
    author = {Christian Kim Christiansen and Jens Honore Walther and Peder Klit and Anders V{\o}lund},
    doi = {10.1016/j.triboint.2017.04.013},
    journal = {Tribology International},
    month = {oct},
    pages = {450--457},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Investigation of journal orbit and flow pattern in a dynamically loaded journal bearing},
    url = {https://doi.org/10.1016%2Fj.triboint.2017.04.013},
    volume = {114},
    year = {2017}
    }

  • L. Fu, S. Litvinov, X. Y. Hu, and N. A. Adams, “A novel partitioning method for block-structured adaptive meshes," Journal of computational physics, vol. 341, pp. 447-473, 2017.
    [BibTeX] [PDF] [DOI]
    @article{fu2017a,
    author = {Lin Fu and Sergej Litvinov and Xiangyu Y. Hu and Nikolaus A. Adams},
    doi = {10.1016/j.jcp.2016.11.016},
    journal = {Journal of Computational Physics},
    month = {jul},
    pages = {447--473},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A novel partitioning method for block-structured adaptive meshes},
    url = {https://doi.org/10.1016%2Fj.jcp.2016.11.016},
    volume = {341},
    year = {2017}
    }

  • I. Hanasaki and J. H. Walther, “Suspended particle transport through constriction channel with Brownian motion," Physical review e, vol. 96, iss. 2, 2017.
    [BibTeX] [PDF] [DOI]
    @article{hanasaki2017a,
    author = {Itsuo Hanasaki and Jens H. Walther},
    doi = {10.1103/physreve.96.023109},
    journal = {Physical Review E},
    month = {aug},
    number = {2},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Suspended particle transport through constriction channel with {B}rownian motion},
    url = {https://doi.org/10.1103%2Fphysreve.96.023109},
    volume = {96},
    year = {2017}
    }

  • E. Hovad, P. Larsen, J. Spangenberg, J. H. Walther, J. Thorborg, and J. H. Hattel, “Cavity prediction in sand mould production applying the DISAMATIC process," Powder technology, vol. 321, pp. 204-217, 2017.
    [BibTeX] [PDF] [DOI]
    @article{hovad2017a,
    author = {Emil Hovad and Per Larsen and Jon Spangenberg and Jens H. Walther and Jesper Thorborg and Jesper H. Hattel},
    doi = {10.1016/j.powtec.2017.08.037},
    journal = {Powder Technology},
    month = {nov},
    pages = {204--217},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Cavity prediction in sand mould production applying the {DISAMATIC} process},
    url = {https://doi.org/10.1016%2Fj.powtec.2017.08.037},
    volume = {321},
    year = {2017}
    }

  • D. Kim, C. Bowman, J. D. T. Bonis-O’Donnell, A. Matzavinos, and D. Stein, “Giant acceleration of DNA diffusion in an array of entropic barriers," Physical review letters, vol. 118, iss. 4, 2017.
    [BibTeX] [PDF] [DOI]
    @article{kim2017a,
    author = {Daniel Kim and Clark Bowman and Jackson T. Del Bonis-O'Donnell and Anastasios Matzavinos and Derek Stein},
    doi = {10.1103/physrevlett.118.048002},
    journal = {Physical Review Letters},
    month = {jan},
    number = {4},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Giant Acceleration of {DNA} Diffusion in an Array of Entropic Barriers},
    url = {https://doi.org/10.1103%2Fphysrevlett.118.048002},
    volume = {118},
    year = {2017}
    }

  • L. T. Nielsen, S. S. Asadzadeh, J. Dölger, J. H. Walther, T. Kiørboe, and A. Andersen, “Hydrodynamics of microbial filter feeding," Proceedings of the national academy of sciences, vol. 114, iss. 35, pp. 9373-9378, 2017.
    [BibTeX] [PDF] [DOI]
    @article{nielsen2017a,
    author = {Nielsen, Lasse Tor and Asadzadeh, Seyed Saeed and D{\"o}lger, Julia and Walther, Jens H. and Ki{\o}rboe, Thomas and Andersen, Anders},
    doi = {10.1073/pnas.1708873114},
    journal = {Proceedings of the National Academy of Sciences},
    month = {aug},
    number = {35},
    pages = {9373--9378},
    publisher = {Proceedings of the National Academy of Sciences},
    section = {Journals},
    title = {Hydrodynamics of microbial filter feeding},
    url = {https://doi.org/10.1073%2Fpnas.1708873114},
    volume = {114},
    year = {2017}
    }

  • J. J. Olsen, C. S. Hemmingsen, L. Bergmann, K. K. Nielsen, S. L. Glimberg, and J. H. Walther, “Characterization and erosion modeling of a nozzle-based inflow-control device," SPE drilling & completion, 2017.
    [BibTeX] [PDF] [DOI]
    @article{olsen2017a,
    author = {J{\'{o}}gvan J. Olsen and Casper S. Hemmingsen and Line Bergmann and Kenny K. Nielsen and Stefan L. Glimberg and Jens H. Walther},
    doi = {10.2118/186090-pa},
    journal = {{SPE} Drilling {\&} Completion},
    month = {may},
    publisher = {Society of Petroleum Engineers ({SPE})},
    section = {Journals},
    title = {Characterization and Erosion Modeling of a Nozzle-Based Inflow-Control Device},
    url = {https://doi.org/10.2118%2F186090-pa},
    year = {2017}
    }

  • K. M. Pang, N. Karvounis, J. H. Walther, J. Schramm, P. Glarborg, and S. Mayer, “Modelling of temporal and spatial evolution of sulphur oxides and sulphuric acid under large, two-stroke marine engine-like conditions using integrated CFD-chemical kinetics," Applied energy, vol. 193, pp. 60-73, 2017.
    [BibTeX] [PDF] [DOI]
    @article{pang2017a,
    author = {Kar Mun Pang and Nikolas Karvounis and Jens Honore Walther and Jesper Schramm and Peter Glarborg and Stefan Mayer},
    doi = {10.1016/j.apenergy.2017.02.020},
    journal = {Applied Energy},
    month = {may},
    pages = {60--73},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Modelling of temporal and spatial evolution of sulphur oxides and sulphuric acid under large, two-stroke marine engine-like conditions using integrated {CFD}-chemical kinetics},
    url = {https://doi.org/10.1016%2Fj.apenergy.2017.02.020},
    volume = {193},
    year = {2017}
    }

  • U. Rasthofer and V. Gravemeier, “Recent developments in variational multiscale methods for large-eddy simulation of turbulent flow," Archives of computational methods in engineering, 2017.
    [BibTeX] [PDF] [DOI]
    @article{rasthofer2017a,
    author = {Ursula Rasthofer and Volker Gravemeier},
    doi = {10.1007/s11831-017-9209-4},
    journal = {Archives of Computational Methods in Engineering},
    month = {feb},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Recent Developments in Variational Multiscale Methods for Large-Eddy Simulation of Turbulent Flow},
    url = {https://doi.org/10.1007%2Fs11831-017-9209-4},
    year = {2017}
    }

  • H. J. Spietz, M. M. Hejlesen, and J. H. Walther, “Iterative Brinkman penalization for simulation of impulsively started flow past a sphere and a circular disc," Journal of computational physics, vol. 336, pp. 261-274, 2017.
    [BibTeX] [PDF] [DOI]
    @article{spietz2017a,
    author = {Spietz, Henrik Juul and Hejlesen, Mads M{\o}lholm and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jcp.2017.01.064},
    journal = {Journal of Computational Physics},
    month = {may},
    pages = {261--274},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Iterative {B}rinkman penalization for simulation of impulsively started flow past a sphere and a circular disc},
    url = {https://doi.org/10.1016%2Fj.jcp.2017.01.064},
    volume = {336},
    year = {2017}
    }

  • E. Wagemann, E. Oyarzua, J. H. Walther, and H. A. Zambrano, “Slip divergence of water flow in graphene nanochannels: the role of chirality," Phys. chem. chem. phys., vol. 19, iss. 13, pp. 8646-8652, 2017.
    [BibTeX] [PDF] [DOI]
    @article{wagemann2017a,
    author = {Enrique Wagemann and Elton Oyarzua and Jens H. Walther and Harvey A. Zambrano},
    doi = {10.1039/c6cp07755b},
    journal = {Phys. Chem. Chem. Phys.},
    number = {13},
    pages = {8646--8652},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Slip divergence of water flow in graphene nanochannels: the role of chirality},
    url = {https://doi.org/10.1039%2Fc6cp07755b},
    volume = {19},
    year = {2017}
    }

  • Y. Yang, J. H. Walther, Y. Yan, and C. Wen, “CFD modeling of condensation process of water vapor in supersonic flows," Applied thermal engineering, vol. 115, pp. 1357-1362, 2017.
    [BibTeX] [PDF] [DOI]
    @article{yang2017a,
    author = {Yan Yang and Jens Honore Walther and Yuying Yan and Chuang Wen},
    doi = {10.1016/j.applthermaleng.2017.01.047},
    journal = {Applied Thermal Engineering},
    month = {mar},
    pages = {1357--1362},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{CFD} modeling of condensation process of water vapor in supersonic flows},
    url = {https://doi.org/10.1016%2Fj.applthermaleng.2017.01.047},
    volume = {115},
    year = {2017}
    }

  • J. Zavadlav and M. Praprotnik, “Adaptive resolution simulations coupling atomistic water to dissipative particle dynamics," The journal of chemical physics, vol. 147, iss. 11, p. 114110, 2017.
    [BibTeX] [PDF] [DOI]
    @article{zavadlav2017a,
    author = {Julija Zavadlav and Matej Praprotnik},
    doi = {10.1063/1.4986916},
    journal = {The Journal of Chemical Physics},
    month = {sep},
    number = {11},
    pages = {114110},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Adaptive resolution simulations coupling atomistic water to dissipative particle dynamics},
    url = {https://doi.org/10.1063%2F1.4986916},
    volume = {147},
    year = {2017}
    }

2016

  • A. Andersen, T. Bohr, T. Schnipper, and J. H. Walther, “Wake structure and thrust generation of a flapping foil in two-dimensional flow," Journal of fluid mechanics, vol. 812, 2016.
    [BibTeX] [PDF] [DOI]
    @article{andersen2016a,
    author = {A. Andersen and T. Bohr and T. Schnipper and J. H. Walther},
    doi = {10.1017/jfm.2016.808},
    journal = {Journal of Fluid Mechanics},
    month = {dec},
    publisher = {Cambridge University Press ({CUP})},
    section = {Journals},
    title = {Wake structure and thrust generation of a flapping foil in two-dimensional flow},
    url = {https://doi.org/10.1017%2Fjfm.2016.808},
    volume = {812},
    year = {2016}
    }

  • B. O. Andersen, N. F. Nielsen, and J. H. Walther, “Numerical and experimental study of pulse-jet cleaning in fabric filters," Powder technology, vol. 291, pp. 284-298, 2016.
    [BibTeX] [PDF] [DOI]
    @article{andersen2016b,
    author = {B.O. Andersen and N.F. Nielsen and J.H. Walther},
    doi = {10.1016/j.powtec.2015.12.028},
    journal = {Powder Technology},
    month = {apr},
    pages = {284--298},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Numerical and experimental study of pulse-jet cleaning in fabric filters},
    url = {https://doi.org/10.1016%2Fj.powtec.2015.12.028},
    volume = {291},
    year = {2016}
    }

  • D. Azarnykh, S. Litvinov, X. Bian, and N. A. Adams, “Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent," Physical review e, vol. 93, iss. 1, 2016.
    [BibTeX] [PDF] [DOI]
    @article{azarnykh2016a,
    author = {Dmitrii Azarnykh and Sergey Litvinov and Xin Bian and Nikolaus A. Adams},
    doi = {10.1103/physreve.93.013302},
    journal = {Physical Review E},
    month = {jan},
    number = {1},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent},
    url = {https://doi.org/10.1103%2Fphysreve.93.013302},
    volume = {93},
    year = {2016}
    }

  • M. M. Hejlesen and J. H. Walther, “A multiresolution method for solving the poisson equation using high order regularization," Journal of computational physics, vol. 326, pp. 188-196, 2016.
    [BibTeX] [PDF] [DOI]
    @article{hejlesen2016a,
    author = {Hejlesen, Mads M{\o}lholm and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jcp.2016.08.053},
    journal = {Journal of Computational Physics},
    month = {dec},
    pages = {188--196},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A multiresolution method for solving the Poisson equation using high order regularization},
    url = {https://doi.org/10.1016%2Fj.jcp.2016.08.053},
    volume = {326},
    year = {2016}
    }

  • C. S. Hemmingsen, K. M. Ingvorsen, S. Mayer, and J. H. Walther, “LES and URANS simulations of the swirling flow in a dynamic model of a uniflow-scavenged cylinder," International journal of heat and fluid flow, vol. 62, pp. 213-223, 2016.
    [BibTeX] [PDF] [DOI]
    @article{hemmingsen2016a,
    author = {Casper S. Hemmingsen and Kristian M. Ingvorsen and Stefan Mayer and Jens H. Walther},
    doi = {10.1016/j.ijheatfluidflow.2016.10.008},
    journal = {International Journal of Heat and Fluid Flow},
    month = {dec},
    pages = {213--223},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{LES} And {URANS} simulations of the swirling flow in a dynamic model of a uniflow-scavenged cylinder},
    url = {https://doi.org/10.1016%2Fj.ijheatfluidflow.2016.10.008},
    volume = {62},
    year = {2016}
    }

  • E. Hovad, J. Spangenberg, P. Larsen, J. H. Walther, J. Thorborg, and J. H. Hattel, “Simulating the DISAMATIC process using the discrete element method — a dynamical study of granular flow," Powder technology, vol. 303, pp. 228-240, 2016.
    [BibTeX] [PDF] [DOI]
    @article{hovad2016a,
    author = {E. Hovad and J. Spangenberg and P. Larsen and J.H. Walther and J. Thorborg and J.H. Hattel},
    doi = {10.1016/j.powtec.2016.09.039},
    journal = {Powder Technology},
    month = {dec},
    pages = {228--240},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Simulating the {DISAMATIC} process using the discrete element method {\textemdash} a dynamical study of granular flow},
    url = {https://doi.org/10.1016%2Fj.powtec.2016.09.039},
    volume = {303},
    year = {2016}
    }

  • N. Karathanasopoulos and P. Angelikopoulos, “Optimal structural arrangements of multilayer helical assemblies," International journal of solids and structures, vol. 78-79, pp. 1-8, 2016.
    [BibTeX] [PDF] [DOI]
    @article{karathanasopoulos2016a,
    author = {Nikolaos Karathanasopoulos and Panagiotis Angelikopoulos},
    doi = {10.1016/j.ijsolstr.2015.09.023},
    journal = {International Journal of Solids and Structures},
    month = {jan},
    pages = {1--8},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Optimal structural arrangements of multilayer helical assemblies},
    url = {https://doi.org/10.1016%2Fj.ijsolstr.2015.09.023},
    volume = {78-79},
    year = {2016}
    }

  • N. K. Karna, E. Oyarzua, J. H. Walther, and H. A. Zambrano, “Effect of the meniscus contact angle during early regimes of spontaneous imbibition in nanochannels," Phys. chem. chem. phys., vol. 18, iss. 47, pp. 31997-32001, 2016.
    [BibTeX] [PDF] [DOI]
    @article{karna2016a,
    author = {Nabin Kumar Karna and Elton Oyarzua and Jens H. Walther and Harvey A. Zambrano},
    doi = {10.1039/c6cp06155a},
    journal = {Phys. Chem. Chem. Phys.},
    number = {47},
    pages = {31997--32001},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Effect of the meniscus contact angle during early regimes of spontaneous imbibition in nanochannels},
    url = {https://doi.org/10.1039%2Fc6cp06155a},
    volume = {18},
    year = {2016}
    }

  • S. Litvinov, Q. Xie, X. Hu, N. Adams, and M. Ellero, “Simulation of individual polymer chains and polymer solutions with smoothed dissipative particle dynamics," Fluids, vol. 1, iss. 1, p. 7, 2016.
    [BibTeX] [DOI]
    @article{litvinov2016a,
    author = {Sergey Litvinov and Qingguang Xie and Xiangyu Hu and Nikolaus Adams and Marco Ellero},
    doi = {10.3390/fluids1010007},
    journal = {Fluids},
    month = {feb},
    number = {1},
    pages = {7},
    publisher = {{MDPI} {AG}},
    section = {Journals},
    title = {Simulation of Individual Polymer Chains and Polymer Solutions with Smoothed Dissipative Particle Dynamics},
    url = {https://doi.org/10.3390%2Ffluids1010007},
    volume = {1},
    year = {2016}
    }

  • S. Mishra, C. Schwab, and J. Šukys, “Multi-level Monte Carlo finite volume methods for uncertainty quantification of acoustic wave propagation in random heterogeneous layered medium," Journal of computational physics, vol. 312, pp. 192-217, 2016.
    [BibTeX] [PDF] [DOI]
    @article{mishra2016a,
    author = {S. Mishra and Ch. Schwab and J. {\v{S}}ukys},
    doi = {10.1016/j.jcp.2016.02.014},
    journal = {Journal of Computational Physics},
    month = {may},
    pages = {192--217},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Multi-level {M}onte {C}arlo finite volume methods for uncertainty quantification of acoustic wave propagation in random heterogeneous layered medium},
    url = {https://doi.org/10.1016%2Fj.jcp.2016.02.014},
    volume = {312},
    year = {2016}
    }

  • K. M. Pang, N. Karvounis, J. H. Walther, and J. Schramm, “Numerical investigation of soot formation and oxidation processes under large two-stroke marine diesel engine-like conditions using integrated CFD-chemical kinetics," Applied energy, vol. 169, pp. 874-887, 2016.
    [BibTeX] [PDF] [DOI]
    @article{pang2016a,
    author = {Kar Mun Pang and Nikolas Karvounis and Jens Honore Walther and Jesper Schramm},
    doi = {10.1016/j.apenergy.2016.02.081},
    journal = {Applied Energy},
    month = {may},
    pages = {874--887},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Numerical investigation of soot formation and oxidation processes under large two-stroke marine diesel engine-like conditions using integrated {CFD}-chemical kinetics},
    url = {https://doi.org/10.1016%2Fj.apenergy.2016.02.081},
    volume = {169},
    year = {2016}
    }

  • C. Wen, A. Li, J. H. Walther, and Y. Yang, “Effect of swirling device on flow behavior in a supersonic separator for natural gas dehydration," Separation and purification technology, vol. 168, pp. 68-73, 2016.
    [BibTeX] [PDF] [DOI]
    @article{wen2016a,
    author = {Chuang Wen and Anqi Li and Jens Honore Walther and Yan Yang},
    doi = {10.1016/j.seppur.2016.05.019},
    journal = {Separation and Purification Technology},
    month = {aug},
    pages = {68--73},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Effect of swirling device on flow behavior in a supersonic separator for natural gas dehydration},
    url = {https://doi.org/10.1016%2Fj.seppur.2016.05.019},
    volume = {168},
    year = {2016}
    }

  • C. Wen, Y. Yang, J. H. Walther, K. M. Pang, and Y. Feng, “Effect of delta wing on the particle flow in a novel gas supersonic separator," Powder technology, vol. 304, pp. 261-267, 2016.
    [BibTeX] [PDF] [DOI]
    @article{wen2016b,
    author = {Chuang Wen and Yan Yang and Jens Honore Walther and Kar Mun Pang and Yuqing Feng},
    doi = {10.1016/j.powtec.2016.07.061},
    journal = {Powder Technology},
    month = {dec},
    pages = {261--267},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Effect of delta wing on the particle flow in a novel gas supersonic separator},
    url = {https://doi.org/10.1016%2Fj.powtec.2016.07.061},
    volume = {304},
    year = {2016}
    }

  • M. Zayernouri and A. Matzavinos, “Fractional adams—bashforth/moulton methods: an application to the fractional keller—segel chemotaxis system," Journal of computational physics, vol. 317, pp. 1-14, 2016.
    [BibTeX] [PDF] [DOI]
    @article{zayernouri2016a,
    author = {Mohsen Zayernouri and Anastasios Matzavinos},
    doi = {10.1016/j.jcp.2016.04.041},
    journal = {Journal of Computational Physics},
    month = {jul},
    pages = {1--14},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Fractional Adams{\textendash}Bashforth/Moulton methods: An application to the fractional Keller{\textendash}Segel chemotaxis system},
    url = {https://doi.org/10.1016%2Fj.jcp.2016.04.041},
    volume = {317},
    year = {2016}
    }

2015

  • M. M. Hejlesen, J. T. Rasmussen, A. Larsen, and J. H. Walther, “On estimating the aerodynamic admittance of bridge sections by a mesh-free vortex method," Journal of wind engineering and industrial aerodynamics, vol. 146, pp. 117-127, 2015.
    [BibTeX] [PDF] [DOI]
    @article{hejlesen2015a,
    author = {Hejlesen, Mads M{\o}lholm and Rasmussen, Johannes Toph{\o}j and Larsen, Allan and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jweia.2015.08.003},
    journal = {Journal of Wind Engineering and Industrial Aerodynamics},
    month = {nov},
    pages = {117--127},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {On estimating the aerodynamic admittance of bridge sections by a mesh-free vortex method},
    url = {https://doi.org/10.1016%2Fj.jweia.2015.08.003},
    volume = {146},
    year = {2015}
    }

  • M. M. Hejlesen, J. T. Rasmussen, P. Chatelain, and J. H. Walther, “High order poisson solver for unbounded flows," Procedia IUTAM, vol. 18, pp. 56-65, 2015.
    [BibTeX] [PDF] [DOI]
    @article{hejlesen2015b,
    author = {Hejlesen, Mads M{\o}lholm and Rasmussen, Johannes Toph{\o}j and Chatelain, Philippe and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.piutam.2015.11.006},
    journal = {Procedia {IUTAM}},
    pages = {56--65},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {High Order Poisson Solver for Unbounded Flows},
    url = {https://doi.org/10.1016%2Fj.piutam.2015.11.006},
    volume = {18},
    year = {2015}
    }

  • E. Oyarzua, J. H. Walther, A. Mejía, and H. A. Zambrano, “Early regimes of water capillary flow in slit silica nanochannels," Phys. chem. chem. phys., vol. 17, iss. 22, pp. 14731-14739, 2015.
    [BibTeX] [PDF] [DOI]
    @article{oyarzua2015a,
    author = {Elton Oyarzua and Jens H. Walther and Andr{\'{e}}s Mej{\'{\i}}a and Harvey A. Zambrano},
    doi = {10.1039/c5cp01862e},
    journal = {Phys. Chem. Chem. Phys.},
    number = {22},
    pages = {14731--14739},
    publisher = {Royal Society of Chemistry ({RSC})},
    section = {Journals},
    title = {Early regimes of water capillary flow in slit silica nanochannels},
    url = {https://doi.org/10.1039%2Fc5cp01862e},
    volume = {17},
    year = {2015}
    }

  • C. Voglis, P. E. Hadjidoukas, K. E. Parsopoulos, D. G. Papageorgiou, I. E. Lagaris, and M. N. Vrahatis, “P-MEMPSODE: parallel and irregular memetic global optimization," Computer physics communications, vol. 197, pp. 190-211, 2015.
    [BibTeX] [PDF] [DOI]
    @article{voglis2015a,
    author = {C. Voglis and P.E. Hadjidoukas and K.E. Parsopoulos and D.G. Papageorgiou and I.E. Lagaris and M.N. Vrahatis},
    doi = {10.1016/j.cpc.2015.07.011},
    journal = {Computer Physics Communications},
    month = {dec},
    pages = {190--211},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {p-{MEMPSODE}: Parallel and irregular memetic global optimization},
    url = {https://doi.org/10.1016%2Fj.cpc.2015.07.011},
    volume = {197},
    year = {2015}
    }

2014

  • M. Fasil, D. Plesner, J. H. Walther, N. Mijatovic, J. Holbøll, and B. B. Jensen, “Numerical and experimental investigation of heat flow in permanent magnet brushless DC hub motor," SAE international journal of alternative powertrains, vol. 4, iss. 1, 2014.
    [BibTeX] [PDF] [DOI]
    @article{fasil2014a,
    author = {Muhammed Fasil and Daniel Plesner and Jens Honore Walther and Nenad Mijatovic and Joachim Holb{\o}ll and Bogi Bech Jensen},
    doi = {10.4271/2014-01-2900},
    journal = {{SAE} International Journal of Alternative Powertrains},
    month = {oct},
    number = {1},
    publisher = {{SAE} International},
    section = {Journals},
    title = {Numerical and Experimental Investigation of Heat Flow in Permanent Magnet Brushless {DC} Hub Motor},
    url = {https://doi.org/10.4271%2F2014-01-2900},
    volume = {4},
    year = {2014}
    }

  • C. L. Felter, J. H. Walther, and C. Henriksen, “Moving least squares simulation of free surface flows," Computers & fluids, vol. 91, pp. 47-56, 2014.
    [BibTeX] [PDF] [DOI]
    @article{felter2014a,
    author = {C.L. Felter and J.H. Walther and C. Henriksen},
    doi = {10.1016/j.compfluid.2013.12.006},
    journal = {Computers {\&} Fluids},
    month = {mar},
    pages = {47--56},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Moving least squares simulation of free surface flows},
    url = {https://doi.org/10.1016%2Fj.compfluid.2013.12.006},
    volume = {91},
    year = {2014}
    }

  • P. E. Hadjidoukas, P. Angelikopoulos, C. Voglis, D. G. Papageorgiou, and I. E. Lagaris, “NDL-v2.0: a new version of the numerical differentiation library for parallel architectures," Computer physics communications, vol. 185, iss. 7, pp. 2217-2219, 2014.
    [BibTeX] [PDF] [DOI]
    @article{hadjidoukas2014a,
    author = {P.E. Hadjidoukas and P. Angelikopoulos and C. Voglis and D.G. Papageorgiou and I.E. Lagaris},
    doi = {10.1016/j.cpc.2014.04.002},
    journal = {Computer Physics Communications},
    month = {jul},
    number = {7},
    pages = {2217--2219},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {{NDL}-v2.0: A new version of the numerical differentiation library for parallel architectures},
    url = {https://doi.org/10.1016%2Fj.cpc.2014.04.002},
    volume = {185},
    year = {2014}
    }

  • P. E. Hadjidoukas, C. Voglis, V. V. Dimakopoulos, I. E. Lagaris, and D. G. Papageorgiou, “Supporting adaptive and irregular parallelism for non-linear numerical optimization," Applied mathematics and computation, vol. 231, pp. 544-559, 2014.
    [BibTeX] [PDF] [DOI]
    @article{hadjidoukas2014b,
    author = {P.E. Hadjidoukas and C. Voglis and V.V. Dimakopoulos and I.E. Lagaris and D.G. Papageorgiou},
    doi = {10.1016/j.amc.2013.12.092},
    journal = {Applied Mathematics and Computation},
    month = {mar},
    pages = {544--559},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Supporting adaptive and irregular parallelism for non-linear numerical optimization},
    url = {https://doi.org/10.1016%2Fj.amc.2013.12.092},
    volume = {231},
    year = {2014}
    }

  • K. M. Ingvorsen, K. E. Meyer, J. H. Walther, and S. Mayer, “Turbulent swirling flow in a dynamic model of a uniflow-scavenged two-stroke engine," Experiments in fluids, vol. 55, iss. 6, 2014.
    [BibTeX] [PDF] [DOI]
    @article{ingvorsen2014a,
    author = {K. M. Ingvorsen and K. E. Meyer and J. H. Walther and S. Mayer},
    doi = {10.1007/s00348-014-1748-y},
    journal = {Experiments in Fluids},
    month = {may},
    number = {6},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Turbulent swirling flow in a dynamic model of a uniflow-scavenged two-stroke engine},
    url = {https://doi.org/10.1007%2Fs00348-014-1748-y},
    volume = {55},
    year = {2014}
    }

  • A. Obeidat, T. Schnipper, K. M. Ingvorsen, S. Haider, K. E. Meyer, S. Mayer, and J. H. Walther, “Large eddy simulations of the influence of piston position on the swirling flow in a model two-stroke diesel engine," International journal of numerical methods for heat & fluid flow, vol. 24, iss. 2, pp. 325-341, 2014.
    [BibTeX] [PDF] [DOI]
    @article{obeidat2014a,
    author = {Anas Obeidat and Teis Schnipper and Kristian M. Ingvorsen and Sajjad Haider and Knud Erik Meyer and Stefan Mayer and Jens H. Walther},
    doi = {10.1108/hff-09-2011-0189},
    journal = {International Journal of Numerical Methods for Heat {\&} Fluid Flow},
    month = {feb},
    number = {2},
    pages = {325--341},
    publisher = {Emerald},
    section = {Journals},
    title = {Large eddy simulations of the influence of piston position on the swirling flow in a model two-stroke diesel engine},
    url = {https://doi.org/10.1108%2Fhff-09-2011-0189},
    volume = {24},
    year = {2014}
    }

  • E. Sigurdsson, K. M. Ingvorsen, M. V. Jensen, S. Mayer, S. Matlok, and J. H. Walther, “Numerical analysis of the scavenge flow and convective heat transfer in large two-stroke marine diesel engines," Applied energy, vol. 123, pp. 37-46, 2014.
    [BibTeX] [PDF] [DOI]
    @article{sigurdsson2014a,
    author = {E. Sigurdsson and K.M. Ingvorsen and M.V. Jensen and S. Mayer and S. Matlok and J.H. Walther},
    doi = {10.1016/j.apenergy.2014.02.036},
    journal = {Applied Energy},
    month = {jun},
    pages = {37--46},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Numerical analysis of the scavenge flow and convective heat transfer in large two-stroke marine diesel engines},
    url = {https://doi.org/10.1016%2Fj.apenergy.2014.02.036},
    volume = {123},
    year = {2014}
    }

  • H. A. Zambrano, J. H. Walther, and R. L. Jaffe, “Molecular dynamics simulations of water on a hydrophilic silica surface at high air pressures," Journal of molecular liquids, vol. 198, pp. 107-113, 2014.
    [BibTeX] [PDF] [DOI]
    @article{zambrano2014a,
    author = {H.A. Zambrano and J.H. Walther and R.L. Jaffe},
    doi = {10.1016/j.molliq.2014.06.003},
    journal = {Journal of Molecular Liquids},
    month = {oct},
    pages = {107--113},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Molecular dynamics simulations of water on a hydrophilic silica surface at high air pressures},
    url = {https://doi.org/10.1016%2Fj.molliq.2014.06.003},
    volume = {198},
    year = {2014}
    }

2013

  • M. M. Hejlesen, J. T. Rasmussen, P. Chatelain, and J. H. Walther, “A high order solver for the unbounded poisson equation," Journal of computational physics, vol. 252, pp. 458-467, 2013.
    [BibTeX] [PDF] [DOI]
    @article{hejlesen2013a,
    author = {Hejlesen, Mads M{\o}lholm and Rasmussen, Johannes Toph{\o}j and Chatelain, Philippe and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jcp.2013.05.050},
    journal = {Journal of Computational Physics},
    month = {nov},
    pages = {458--467},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A high order solver for the unbounded Poisson equation},
    url = {https://doi.org/10.1016%2Fj.jcp.2013.05.050},
    volume = {252},
    year = {2013}
    }

  • M. V. Jensen and J. H. Walther, “Numerical analysis of jet impingement heat transfer at high jet Reynolds number and large temperature difference," Heat transfer engineering, vol. 34, iss. 10, pp. 801-809, 2013.
    [BibTeX] [PDF] [DOI]
    @article{jensen2013a,
    author = {Michael V. Jensen and Jens H. Walther},
    doi = {10.1080/01457632.2012.746153},
    journal = {Heat Transfer Engineering},
    month = {aug},
    number = {10},
    pages = {801--809},
    publisher = {Informa {UK} Limited},
    section = {Journals},
    title = {Numerical Analysis of Jet Impingement Heat Transfer at High Jet {R}eynolds Number and Large Temperature Difference},
    url = {https://doi.org/10.1080%2F01457632.2012.746153},
    volume = {34},
    year = {2013}
    }

  • C. Voglis, P. E. Hadjidoukas, D. G. Papageorgiou, and I. E. Lagaris, “A parallel hybrid optimization algorithm for fitting interatomic potentials," Applied soft computing, vol. 13, iss. 12, pp. 4481-4492, 2013.
    [BibTeX] [PDF] [DOI]
    @article{voglis2013a,
    author = {C. Voglis and P.E. Hadjidoukas and D.G. Papageorgiou and I.E. Lagaris},
    doi = {10.1016/j.asoc.2013.08.007},
    journal = {Applied Soft Computing},
    month = {dec},
    number = {12},
    pages = {4481--4492},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A parallel hybrid optimization algorithm for fitting interatomic potentials},
    url = {https://doi.org/10.1016%2Fj.asoc.2013.08.007},
    volume = {13},
    year = {2013}
    }

2012

  • S. Haider, T. Schnipper, A. Obeidat, K. E. Meyer, V. L. Okulov, S. Mayer, and J. H. Walther, “PIV study of the effect of piston position on the in-cylinder swirling flow during the scavenging process in large two-stroke marine diesel engines," Journal of marine science and technology, vol. 18, iss. 1, pp. 133-143, 2012.
    [BibTeX] [PDF] [DOI]
    @article{haider2012a,
    author = {S. Haider and T. Schnipper and A. Obeidat and K. E. Meyer and V. L. Okulov and S. Mayer and J. H. Walther},
    doi = {10.1007/s00773-012-0192-z},
    journal = {Journal of Marine Science and Technology},
    month = {sep},
    number = {1},
    pages = {133--143},
    publisher = {Springer Nature},
    section = {Journals},
    title = {{PIV} study of the effect of piston position on the in-cylinder swirling flow during the scavenging process in large two-stroke marine diesel engines},
    url = {https://doi.org/10.1007%2Fs00773-012-0192-z},
    volume = {18},
    year = {2012}
    }

2011

  • J. T. Rasmussen, G. Cottet, and J. H. Walther, “A multiresolution remeshed vortex-in-cell algorithm using patches," Journal of computational physics, vol. 230, iss. 17, pp. 6742-6755, 2011.
    [BibTeX] [PDF] [DOI]
    @article{rasmussen2011a,
    author = {Johannes Toph{\o}j Rasmussen and Georges-Henri Cottet and Jens Honor{\'{e}} Walther},
    doi = {10.1016/j.jcp.2011.05.006},
    journal = {Journal of Computational Physics},
    month = {jul},
    number = {17},
    pages = {6742--6755},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {A multiresolution remeshed Vortex-In-Cell algorithm using patches},
    url = {https://doi.org/10.1016%2Fj.jcp.2011.05.006},
    volume = {230},
    year = {2011}
    }

  • H. Riisgård, H. B. Jørgensen, K. Lundgreen, F. Storti, J. Walther, K. Meyer, and P. Larsen, “The exhalant jet of mussels mytilus edulis," Marine ecology progress series, vol. 437, pp. 147-164, 2011.
    [BibTeX] [PDF] [DOI]
    @article{riisgard2011a,
    author = {HU Riisg{\aa}rd and B Hoffmann J{\o}rgensen and K Lundgreen and F Storti and JH Walther and KE Meyer and PS Larsen},
    doi = {10.3354/meps09268},
    journal = {Marine Ecology Progress Series},
    month = {sep},
    pages = {147--164},
    publisher = {Inter-Research Science Center},
    section = {Journals},
    title = {The exhalant jet of mussels Mytilus edulis},
    url = {https://doi.org/10.3354%2Fmeps09268},
    volume = {437},
    year = {2011}
    }

2010

  • J. T. Rasmussen, M. M. Hejlesen, A. Larsen, and J. H. Walther, “Discrete vortex method simulations of the aerodynamic admittance in bridge aerodynamics," Journal of wind engineering and industrial aerodynamics, vol. 98, iss. 12, pp. 754-766, 2010.
    [BibTeX] [PDF] [DOI]
    @article{rasmussen2010a,
    author = {Rasmussen, Johannes Toph{\o}j and Hejlesen, Mads M{\o}lholm and Larsen, Allan and Walther, Jens Honor{\'{e}}},
    doi = {10.1016/j.jweia.2010.06.011},
    journal = {Journal of Wind Engineering and Industrial Aerodynamics},
    month = {dec},
    number = {12},
    pages = {754--766},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Discrete vortex method simulations of the aerodynamic admittance in bridge aerodynamics},
    url = {https://doi.org/10.1016%2Fj.jweia.2010.06.011},
    volume = {98},
    year = {2010}
    }

2009

  • J. H. Walther and I. F. Sbalzarini, “Large-scale parallel discrete element simulations of granular flow," Engineering computations, vol. 26, iss. 6, pp. 688-697, 2009.
    [BibTeX] [PDF] [DOI]
    @article{walther2009a,
    author = {Jens H. Walther and Ivo F. Sbalzarini},
    doi = {10.1108/02644400910975478},
    editor = {Antonio Munjiza},
    journal = {Engineering Computations},
    month = {aug},
    number = {6},
    pages = {688--697},
    publisher = {Emerald},
    section = {Journals},
    title = {Large-scale parallel discrete element simulations of granular flow},
    url = {https://doi.org/10.1108%2F02644400910975478},
    volume = {26},
    year = {2009}
    }

  • H. A. Zambrano, J. H. Walther, and R. L. Jaffe, “Thermally driven molecular linear motors: a molecular dynamics study," The journal of chemical physics, vol. 131, iss. 24, p. 241104, 2009.
    [BibTeX] [PDF] [DOI]
    @article{zambrano2009a,
    author = {H. A. Zambrano and J. H. Walther and R. L. Jaffe},
    doi = {10.1063/1.3281642},
    journal = {The Journal of Chemical Physics},
    month = {dec},
    number = {24},
    pages = {241104},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Thermally driven molecular linear motors: A molecular dynamics study},
    url = {https://doi.org/10.1063%2F1.3281642},
    volume = {131},
    year = {2009}
    }

2007

  • G. Morgenthal and J. H. Walther, “An immersed interface method for the vortex-in-cell algorithm," Computers & structures, vol. 85, iss. 11-14, pp. 712-726, 2007.
    [BibTeX] [PDF] [DOI]
    @article{morgenthal2007a,
    author = {G. Morgenthal and J.H. Walther},
    doi = {10.1016/j.compstruc.2007.01.020},
    journal = {Computers {\&} Structures},
    month = {jun},
    number = {11-14},
    pages = {712--726},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {An immersed interface method for the Vortex-In-Cell algorithm},
    url = {https://doi.org/10.1016%2Fj.compstruc.2007.01.020},
    volume = {85},
    year = {2007}
    }

2006

  • N. Hansen, “An analysis of mutative Σ-self-adaptation on linear fitness functions," Evolutionary computation, vol. 14, iss. 3, pp. 255-275, 2006.
    [BibTeX] [PDF] [DOI]
    @article{hansen2006a,
    author = {Nikolaus Hansen},
    doi = {10.1162/evco.2006.14.3.255},
    journal = {Evolutionary Computation},
    month = {sep},
    number = {3},
    pages = {255--275},
    publisher = {{MIT} Press - Journals},
    section = {Journals},
    title = {An Analysis of Mutative \Sigma-Self-Adaptation on Linear Fitness Functions},
    url = {https://doi.org/10.1162%2Fevco.2006.14.3.255},
    volume = {14},
    year = {2006}
    }

  • S. Zimmermann, P. Bauer, R. Held, W. Kinzelbach, and J. H. Walther, “Salt transport on islands in the okavango delta: numerical investigations," Advances in water resources, vol. 29, iss. 1, pp. 11-29, 2006.
    [BibTeX] [PDF] [DOI]
    @article{zimmermann2006a,
    author = {S. Zimmermann and P. Bauer and R. Held and W. Kinzelbach and J.H. Walther},
    doi = {10.1016/j.advwatres.2005.04.013},
    journal = {Advances in Water Resources},
    month = {jan},
    number = {1},
    pages = {11--29},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Salt transport on islands in the Okavango Delta: Numerical investigations},
    url = {https://doi.org/10.1016%2Fj.advwatres.2005.04.013},
    volume = {29},
    year = {2006}
    }

2005

  • C. Luedeke, S. B. Frei, I. Sbalzarini, H. Schwarz, A. Spang, and Y. Barral, “Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth," The journal of cell biology, vol. 169, iss. 6, pp. 897-908, 2005.
    [BibTeX] [PDF] [DOI]
    @article{luedeke2005a,
    author = {Cosima Luedeke and St{\'{e}}phanie Buvelot Frei and Ivo Sbalzarini and Heinz Schwarz and Anne Spang and Yves Barral},
    doi = {10.1083/jcb.200412143},
    journal = {The Journal of Cell Biology},
    month = {jun},
    number = {6},
    pages = {897--908},
    publisher = {Rockefeller University Press},
    section = {Journals},
    title = {Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth},
    url = {https://doi.org/10.1083%2Fjcb.200412143},
    volume = {169},
    year = {2005}
    }

2004

  • P. Gonnet, K. E. Rudd, and F. Lisacek, “Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins ofEscherichia coli k-12," Proteomics, vol. 4, iss. 6, pp. 1597-1613, 2004.
    [BibTeX] [PDF] [DOI]
    @article{gonnet2004a,
    author = {Pedro Gonnet and Kenneth E. Rudd and Fr{\'{e}}d{\'{e}}rique Lisacek},
    doi = {10.1002/pmic.200300749},
    journal = {PROTEOMICS},
    month = {jun},
    number = {6},
    pages = {1597--1613},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Fine-tuning the prediction of sequences cleaved by signal peptidase {II}: A curated set of proven and predicted lipoproteins {ofEscherichia} coli K-12},
    url = {https://doi.org/10.1002%2Fpmic.200300749},
    volume = {4},
    year = {2004}
    }

  • F. Lisacek, C. Chichester, P. Gonnet, O. Jaillet, S. Kappus, F. Nikitin, P. Roland, G. Rossier, L. Truong, and R. Appel, “Shaping biological knowledge: applications in proteomics," Comparative and functional genomics, vol. 5, iss. 2, pp. 190-195, 2004.
    [BibTeX] [PDF] [DOI]
    @article{lisacek2004a,
    author = {F. Lisacek and C. Chichester and P. Gonnet and O. Jaillet and S. Kappus and F. Nikitin and P. Roland and G. Rossier and L. Truong and R. Appel},
    doi = {10.1002/cfg.379},
    journal = {Comparative and Functional Genomics},
    number = {2},
    pages = {190--195},
    publisher = {Hindawi Limited},
    section = {Journals},
    title = {Shaping Biological Knowledge: Applications in Proteomics},
    url = {https://doi.org/10.1002%2Fcfg.379},
    volume = {5},
    year = {2004}
    }

2003

  • M. Bergdorf, C. Peter, and P. H. Hünenberger, “Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions: a continuum electrostatics study," The journal of chemical physics, vol. 119, iss. 17, pp. 9129-9144, 2003.
    [BibTeX] [PDF] [DOI]
    @article{bergdorf2003a,
    author = {Michael Bergdorf and Christine Peter and Philippe H. H{\"u}nenberger},
    doi = {10.1063/1.1614202},
    journal = {The Journal of Chemical Physics},
    month = {nov},
    number = {17},
    pages = {9129--9144},
    publisher = {{AIP} Publishing},
    section = {Journals},
    title = {Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions: A continuum electrostatics study},
    url = {https://doi.org/10.1063%2F1.1614202},
    volume = {119},
    year = {2003}
    }

  • F. A. Gers, N. N. Schraudolph, and J. Schmidhuber, “Learning precise timing with lstm recurrent networks," J. mach. learn. res., vol. 3, pp. 115-143, 2003.
    [BibTeX] [PDF] [DOI]
    @article{gers2003a,
    acmid = {944925},
    author = {Gers, Felix A. and Schraudolph, Nicol N. and Schmidhuber, J\"{u}rgen},
    doi = {10.1162/153244303768966139},
    issn = {1532-4435},
    issue_date = {3/1/2003},
    journal = {J. Mach. Learn. Res.},
    keywords = {long short-term memory, recurrent neural networks, timing},
    month = {mar},
    numpages = {29},
    pages = {115--143},
    publisher = {JMLR.org},
    section = {Journals},
    title = {Learning Precise Timing with Lstm Recurrent Networks},
    url = {http://dx.doi.org/10.1162/153244303768966139},
    volume = {3},
    year = {2003}
    }

  • J. H. Walther, “An influence matrix particle—particle particle-mesh algorithm with exact particle—particle correction," Journal of computational physics, vol. 184, iss. 2, pp. 670-678, 2003.
    [BibTeX] [PDF] [DOI]
    @article{walther2003a,
    author = {J.H. Walther},
    doi = {10.1016/s0021-9991(02)00035-9},
    journal = {Journal of Computational Physics},
    month = {jan},
    number = {2},
    pages = {670--678},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {An influence matrix particle{\textendash}particle particle-mesh algorithm with exact particle{\textendash}particle correction},
    url = {https://doi.org/10.1016%2Fs0021-9991%2802%2900035-9},
    volume = {184},
    year = {2003}
    }

2002

  • S. Attinger, “Parameterizing macro-dispersivity: first pick a length scale," Hydrological processes, vol. 16, iss. 8, pp. 1685-1687, 2002.
    [BibTeX] [PDF] [DOI]
    @article{attinger2002a,
    author = {Sabine Attinger},
    doi = {10.1002/hyp.5009},
    journal = {Hydrological Processes},
    number = {8},
    pages = {1685--1687},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Parameterizing macro-dispersivity: first pick a length scale},
    url = {https://doi.org/10.1002%2Fhyp.5009},
    volume = {16},
    year = {2002}
    }

  • S. Attinger, J. Eberhard, and N. Neuss, “Filtering procedures for flow in heterogeneous porous media: numerical results," Computing and visualization in science, vol. 5, iss. 2, pp. 67-72, 2002.
    [BibTeX] [PDF] [DOI]
    @article{attinger2002b,
    author = {Sabine Attinger and Jens Eberhard and Nicolas Neuss},
    doi = {10.1007/s00791-002-0088-2},
    journal = {Computing and Visualization in Science},
    month = {oct},
    number = {2},
    pages = {67--72},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Filtering procedures for flow in heterogeneous porous media: numerical results},
    url = {https://doi.org/10.1007%2Fs00791-002-0088-2},
    volume = {5},
    year = {2002}
    }

  • M. Dentz, H. Kinzelbach, S. Attinger, and W. Kinzelbach, “Temporal behavior of a solute cloud in a heterogeneous porous medium 3. numerical simulations," Water resources research, vol. 38, iss. 7, p. 23–1–23–13, 2002.
    [BibTeX] [PDF] [DOI]
    @article{dentz2002a,
    author = {Marco Dentz and Harald Kinzelbach and Sabine Attinger and Wolfgang Kinzelbach},
    doi = {10.1029/2001wr000436},
    journal = {Water Resources Research},
    month = {jul},
    number = {7},
    pages = {23--1--23--13},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Temporal behavior of a solute cloud in a heterogeneous porous medium 3. Numerical simulations},
    url = {https://doi.org/10.1029%2F2001wr000436},
    volume = {38},
    year = {2002}
    }

  • P. Gonnet and F. Lisacek, “Probabilistic alignment of motifs with sequences," Bioinformatics, vol. 18, iss. 8, pp. 1091-1101, 2002.
    [BibTeX] [PDF] [DOI]
    @article{gonnet2002a,
    author = {P. Gonnet and F. Lisacek},
    doi = {10.1093/bioinformatics/18.8.1091},
    journal = {Bioinformatics},
    month = {aug},
    number = {8},
    pages = {1091--1101},
    publisher = {Oxford University Press ({OUP})},
    section = {Journals},
    title = {Probabilistic alignment of motifs with sequences},
    url = {https://doi.org/10.1093%2Fbioinformatics%2F18.8.1091},
    volume = {18},
    year = {2002}
    }

  • R. Herbrich and T. Graepel, “A PAC-Bayesian margin bound for linear classifiers," IEEE transactions on information theory, vol. 48, iss. 12, pp. 3140-3150, 2002.
    [BibTeX] [PDF] [DOI]
    @article{herbrich2002a,
    author = {R. Herbrich and T. Graepel},
    doi = {10.1109/tit.2002.805090},
    journal = {{IEEE} Transactions on Information Theory},
    month = {dec},
    number = {12},
    pages = {3140--3150},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {A {PAC}-{B}ayesian margin bound for linear classifiers},
    url = {https://doi.org/10.1109%2Ftit.2002.805090},
    volume = {48},
    year = {2002}
    }

  • I. Lunati, S. Attinger, and W. Kinzelbach, “Macrodispersivity for transport in arbitrary nonuniform flow fields: asymptotic and preasymptotic results," Water resources research, vol. 38, iss. 10, p. 5–1–5–11, 2002.
    [BibTeX] [PDF] [DOI]
    @article{lunati2002a,
    author = {Ivan Lunati and Sabine Attinger and Wolfgang Kinzelbach},
    doi = {10.1029/2001wr001203},
    journal = {Water Resources Research},
    month = {oct},
    number = {10},
    pages = {5--1--5--11},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Macrodispersivity for transport in arbitrary nonuniform flow fields: Asymptotic and preasymptotic results},
    url = {https://doi.org/10.1029%2F2001wr001203},
    volume = {38},
    year = {2002}
    }

  • N. N. Schraudolph, “Fast curvature matrix-vector products for second-order gradient descent," Neural computation, vol. 14, iss. 7, pp. 1723-1738, 2002.
    [BibTeX] [PDF] [DOI]
    @article{schraudolph2002a,
    author = {Nicol N. Schraudolph},
    doi = {10.1162/08997660260028683},
    journal = {Neural Computation},
    month = {jul},
    number = {7},
    pages = {1723--1738},
    publisher = {{MIT} Press - Journals},
    section = {Journals},
    title = {Fast Curvature Matrix-Vector Products for Second-Order Gradient Descent},
    url = {https://doi.org/10.1162%2F08997660260028683},
    volume = {14},
    year = {2002}
    }

  • F. Stauffer, S. Attinger, S. Zimmermann, and W. Kinzelbach, “Uncertainty estimation of well catchments in heterogeneous aquifers," Water resources research, vol. 38, iss. 11, p. 20–1–20–8, 2002.
    [BibTeX] [PDF] [DOI]
    @article{stauffer2002a,
    author = {Fritz Stauffer and Sabine Attinger and Stephanie Zimmermann and Wolfgang Kinzelbach},
    doi = {10.1029/2001wr000819},
    journal = {Water Resources Research},
    month = {nov},
    number = {11},
    pages = {20--1--20--8},
    publisher = {Wiley-Blackwell},
    section = {Journals},
    title = {Uncertainty estimation of well catchments in heterogeneous aquifers},
    url = {https://doi.org/10.1029%2F2001wr000819},
    volume = {38},
    year = {2002}
    }

  • J. H. Walther and G. Morgenthal, “An immersed interface method for the vortex-in-cell algorithm," Journal of turbulence, vol. 3, p. N39, 2002.
    [BibTeX] [PDF] [DOI]
    @article{walther2002a,
    author = {J H Walther and G Morgenthal},
    doi = {10.1088/1468-5248/3/1/039},
    eprint = {http://dx.doi.org/10.1088/1468-5248/3/1/039},
    journal = {Journal of Turbulence},
    pages = {N39},
    section = {Journals},
    title = {An immersed interface method for the vortex-in-cell algorithm},
    url = {http://dx.doi.org/10.1088/1468-5248/3/1/039},
    volume = {3},
    year = {2002}
    }

  • P. Yi, D. Poulikakos, J. Walther, and G. Yadigaroglu, “Molecular dynamics simulation of vaporization of an ultra-thin liquid argon layer on a surface," International journal of heat and mass transfer, vol. 45, iss. 10, pp. 2087-2100, 2002.
    [BibTeX] [PDF] [DOI]
    @article{yi2002a,
    author = {Pan Yi and D. Poulikakos and J. Walther and G. Yadigaroglu},
    doi = {10.1016/s0017-9310(01)00310-6},
    journal = {International Journal of Heat and Mass Transfer},
    month = {may},
    number = {10},
    pages = {2087--2100},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Molecular dynamics simulation of vaporization of an ultra-thin liquid argon layer on a surface},
    url = {https://doi.org/10.1016%2Fs0017-9310%2801%2900310-6},
    volume = {45},
    year = {2002}
    }

2001

  • N. Hansen and A. Ostermeier, “Completely derandomized self-adaptation in evolution strategies," Evolutionary computation, vol. 9, iss. 2, pp. 159-195, 2001.
    [BibTeX] [PDF] [DOI]
    @article{hansen2001a,
    author = {Nikolaus Hansen and Andreas Ostermeier},
    doi = {10.1162/106365601750190398},
    journal = {Evolutionary Computation},
    month = {jun},
    number = {2},
    pages = {159--195},
    publisher = {{MIT} Press - Journals},
    section = {Journals},
    title = {Completely Derandomized Self-Adaptation in Evolution Strategies},
    url = {https://doi.org/10.1162%2F106365601750190398},
    volume = {9},
    year = {2001}
    }

  • M. Klapper-Rybicka, N. N. Schraudolph, and J. Schmidhuber, “Unsupervised learning in LSTM recurrent neural networks," in Artificial neural networks — ICANN 2001, Springer Berlin Heidelberg, 2001, pp. 684-691.
    [BibTeX] [DOI]
    @incollection{klapperrybicka2001a,
    author = {Magdalena Klapper-Rybicka and Nicol N. Schraudolph and J{\"u}rgen Schmidhuber},
    booktitle = {Artificial Neural Networks {\textemdash} {ICANN} 2001},
    doi = {10.1007/3-540-44668-0_95},
    pages = {684--691},
    publisher = {Springer Berlin Heidelberg},
    section = {Journals},
    title = {Unsupervised Learning in {LSTM} Recurrent Neural Networks},
    url = {https://doi.org/10.1007%2F3-540-44668-0_95},
    year = {2001}
    }

  • T. Werder, K. Gerdes, D. Schötzau, and C. Schwab, “Hp-discontinuous galerkin time stepping for parabolic problems," Computer methods in applied mechanics and engineering, vol. 190, iss. 49-50, pp. 6685-6708, 2001.
    [BibTeX] [PDF] [DOI]
    @article{werder2001a,
    author = {T. Werder and K. Gerdes and D. Sch{\"o}tzau and C. Schwab},
    doi = {10.1016/s0045-7825(01)00258-4},
    journal = {Computer Methods in Applied Mechanics and Engineering},
    month = {oct},
    number = {49-50},
    pages = {6685--6708},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {hp-Discontinuous Galerkin time stepping for parabolic problems},
    url = {https://doi.org/10.1016%2Fs0045-7825%2801%2900258-4},
    volume = {190},
    year = {2001}
    }

2000

  • D. Bueche, N. Sukumar, and B. Moran, “Dispersive properties of the natural element method," Computational mechanics, vol. 25, iss. 2-3, pp. 207-219, 2000.
    [BibTeX] [PDF] [DOI]
    @article{bueche2000a,
    author = {D. Bueche and N. Sukumar and B. Moran},
    doi = {10.1007/s004660050470},
    journal = {Computational Mechanics},
    month = {mar},
    number = {2-3},
    pages = {207--219},
    publisher = {Springer Nature},
    section = {Journals},
    title = {Dispersive properties of the natural element method},
    url = {https://doi.org/10.1007%2Fs004660050470},
    volume = {25},
    year = {2000}
    }

  • L. Glielmo, M. Milano, and S. Santini, “A machine learning approach to modeling and identification of automotive three-way catalytic converters," IEEE/ASME transactions on mechatronics, vol. 5, iss. 2, pp. 132-141, 2000.
    [BibTeX] [PDF] [DOI]
    @article{glielmo2000a,
    author = {L. Glielmo and M. Milano and S. Santini},
    doi = {10.1109/3516.847086},
    journal = {{IEEE}/{ASME} Transactions on Mechatronics},
    month = {jun},
    number = {2},
    pages = {132--141},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {A machine learning approach to modeling and identification of automotive three-way catalytic converters},
    url = {https://doi.org/10.1109%2F3516.847086},
    volume = {5},
    year = {2000}
    }

1999

  • P. Marino, M. Milano, and F. Vasca, “Linear quadratic state feedback and robust neural network estimator for field-oriented-controlled induction motors," IEEE transactions on industrial electronics, vol. 46, iss. 1, pp. 150-161, 1999.
    [BibTeX] [DOI]
    @article{marino1999a,
    author = {P. Marino and M. Milano and F. Vasca},
    doi = {10.1109/41.744406},
    journal = {{IEEE} Transactions on Industrial Electronics},
    number = {1},
    pages = {150--161},
    publisher = {Institute of Electrical and Electronics Engineers ({IEEE})},
    section = {Journals},
    title = {Linear quadratic state feedback and robust neural network estimator for field-oriented-controlled induction motors},
    url = {https://doi.org/10.1109%2F41.744406},
    volume = {46},
    year = {1999}
    }

1998

  • A. Larsen and J. H. Walther, “Discrete vortex simulation of flow around five generic bridge deck sections," Journal of wind engineering and industrial aerodynamics, vol. 77-78, pp. 591-602, 1998.
    [BibTeX] [PDF] [DOI]
    @article{larsen1998a,
    author = {Allan Larsen and Jens H. Walther},
    doi = {10.1016/s0167-6105(98)00175-5},
    journal = {Journal of Wind Engineering and Industrial Aerodynamics},
    month = {sep},
    pages = {591--602},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Discrete vortex simulation of flow around five generic bridge deck sections},
    url = {https://doi.org/10.1016%2Fs0167-6105%2898%2900175-5},
    volume = {77-78},
    year = {1998}
    }

1997

  • A. Larsen and J. H. Walther, “Aeroelastic analysis of bridge girder sections based on discrete vortex simulations," Journal of wind engineering and industrial aerodynamics, vol. 67-68, pp. 253-265, 1997.
    [BibTeX] [PDF] [DOI]
    @article{larsen1997a,
    author = {Allan Larsen and Jens H. Walther},
    doi = {10.1016/s0167-6105(97)00077-9},
    journal = {Journal of Wind Engineering and Industrial Aerodynamics},
    month = {apr},
    pages = {253--265},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Aeroelastic analysis of bridge girder sections based on discrete vortex simulations},
    url = {https://doi.org/10.1016%2Fs0167-6105%2897%2900077-9},
    volume = {67-68},
    year = {1997}
    }

  • L. Milano, F. Barone, and M. Milano, “Time domain amplitude and frequency detection of gravitational waves from coalescing binaries," Physical review d, vol. 55, iss. 8, pp. 4537-4554, 1997.
    [BibTeX] [PDF] [DOI]
    @article{milano1997a,
    author = {L. Milano and F. Barone and M. Milano},
    doi = {10.1103/physrevd.55.4537},
    journal = {Physical Review D},
    month = {apr},
    number = {8},
    pages = {4537--4554},
    publisher = {American Physical Society ({APS})},
    section = {Journals},
    title = {Time domain amplitude and frequency detection of gravitational waves from coalescing binaries},
    url = {https://doi.org/10.1103%2Fphysrevd.55.4537},
    volume = {55},
    year = {1997}
    }

  • L. Milano, F. Barone, and M. Milano, “Detection of gravitational waves from coalescing binaries in the time domain," Classical and quantum gravity, vol. 14, iss. 6, pp. 1531-1536, 1997.
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    @article{milano1997b,
    author = {L Milano and F Barone and M Milano},
    doi = {10.1088/0264-9381/14/6/023},
    journal = {Classical and Quantum Gravity},
    month = {jun},
    number = {6},
    pages = {1531--1536},
    publisher = {{IOP} Publishing},
    section = {Journals},
    title = {Detection of gravitational waves from coalescing binaries in the time domain},
    url = {https://doi.org/10.1088%2F0264-9381%2F14%2F6%2F023},
    volume = {14},
    year = {1997}
    }

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    [BibTeX] [DOI]
    @article{walther1997a,
    author = {Jens Honor{\'{e}} Walther and Allan Larsen},
    doi = {10.1016/s0167-6105(97)00072-x},
    journal = {Journal of Wind Engineering and Industrial Aerodynamics},
    month = {apr},
    pages = {183--193},
    publisher = {Elsevier {BV}},
    section = {Journals},
    title = {Two dimensional discrete vortex method for application to bluff body aerodynamics},
    url = {https://doi.org/10.1016%2Fs0167-6105%2897%2900072-x},
    volume = {67-68},
    year = {1997}
    }